Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0875 ATGGAGTCTACATCTTCATCCTTCCTAACATCAGATCCCAATTTCATATACGATGTGTTCATCAACTTTGGTGGAGAAGACGTCGGTAGAAGGTTTGTTTCTCATCTCCACTCTGTCCTTTTACAAAATCAAGTCAAAACTTTGATTAGCCAGGAGAATTTGCATGAGGGAATGGAGCTGGAAGAGCAGATGCGAGGCATAGGAGGCACTAAGATTACAATAATTGTTTTCTCCAAATCATACGCTGAATCTGCTTGCTGTCTTCTCGAGCTTGAAAAAATCATTGAATGCCACGAAACATTTGGCCAAATAGTTCTGCCCGTATTTTACGAGATTGACCTATTTGATATACTTCATCAGATGTTTGATTTTGGACAAGCGTTGGAAGAAGCTGCACACAAAAGCTATTCAGGAGAACAAGTGGAACATGCGTTGTGCAAGTGGAGCCGTGCACTCACCACAGCTGCGGGTATGACTGGTTGGGATGTCAGAAAATTCAGGCATGATGCTGAACTTGTAGACGTAATTGTTAACCGCATTAAGACATTACTGGACTACAAAGACTTGTTTATTACCAAATATCCAGTTGGATTAGAGTCCCGCGTGGAAGAAGTGATTAAATGTATTGAAAATGAATCCAGCAAAGTGTGTATGATAGGAATATGGGGAATGGGAGGATCAGGTAAAACGACCATAGCCAAAGCCATCTACAATCGAATTTATCGTCAATTCATTGGTAAGAGTTTTATTGAGAATATTCGTTATGAAAGGTATGTTACTTTGCAAGAAAATCTTCTTTCTGATGTCCTAAAATCCAAGTTGGAGGTGAATAGCGTTGGGATGGGAAGAACTATGATCCAGAATGGATTTTCTCGAAAAAAGTTGCTCATTGTGCTTGATGACGTGAGTGGCTTTGACCAATTGGAAAACCTATATGGGAGTCGTGAATGGTTCGGTCAAGGAACTGTGATAATCATTACAACTAGAAATGTTAGCCTGTGGAACCGACTCGAAGTTAATTATGTTTATCAAACGCATCTTTTGAACGAAAATGAGTCACTTGAGCTTTTTAGTTGGCATACCTTTAGAGTAGCAAAACCAAAAAAGGAATGGAGTTTACTCGCAAGGAACGTCGTTGTTTATTGTAGAGGACTACCGCTAGCTCTTCAGTGCCTTAGTTCTTGTTTATGTGATAGGACAATAGAAGTGTGGGAAAGTGTATTATTGAAACTACAAAGAATTCCCCCGAATGAACTTCTGAGTGTATTAAAAATAAGTTTTGAAGATTTACGTGATACGGAAAAGGATATATTTCTGGATGTATGTTGTTTCTTTATTGGCAAAGACAGAGATTATGTGACAGAGATATTAAATGGGTGTGGACTACATGCTGATATTGGAATAACACTTCTCATAGAGCGTGGCCTCATAAAAGTTGAAAAGAACAACAAACTTCAAATGTATTCTTTGTTACAAGATATGGGAAGAGAAATTATTCGTCAGGAATGCCCAGAGAAACCAGGGAAAAGAAGTCGATTGTGGTTTCAGAATGACGTAGAAGATGTACTGAAAGAGAATACTGGGACAGAAGCTATCAAGGGATTGTCCCTGAAACATTCCAGGATTAGAGGTTGCTTTGAAGCTCATGCTTTCAAGGAAATGAAGAGACTAAGACTGCTACAACTTGATAATGTACAACTTAGGGGAGATTGTGGGCACATTTCTAAACAACTGAGATGGATTTGTTGGCGAGGCTTTCCTTATAGATACATTCCAAAGGACTTTCATTTGGAAAATTTAATTGCAATTGATTTTAAGCATAGTCTTCTCTATCTCTGGGAACAACGCGTGGTTTTAGAGCGGTTAAAATTTCTTAATCTTAGTCACTCCAAATACTTGAAAGAAACACCTGACTTTTCCAGACTACCAAGTCTTGAACAGCTCATTCTTAAAGATTGTCCAAGATTGCTCAAGGTACACTCATCCATTGGTGATCTCTCCAATATAGTATTAATAAATTTGAAGGATTGCAGAAGTCTAAGCTATCTCCCAAGAGAGATGCATAAGTTGAGATCTTTAAAAACTCTCATCGTATCTGGTTGTTGTTCGAAGCTTAGGCCATTGGAAAAGATATAA 2136 0.3844 MESTSSSFLTSDPNFIYDVFINFGGEDVGRRFVSHLHSVLLQNQVKTLISQENLHEGMELEEQMRGIGGTKITIIVFSKSYAESACCLLELEKIIECHETFGQIVLPVFYEIDLFDILHQMFDFGQALEEAAHKSYSGEQVEHALCKWSRALTTAAGMTGWDVRKFRHDAELVDVIVNRIKTLLDYKDLFITKYPVGLESRVEEVIKCIENESSKVCMIGIWGMGGSGKTTIAKAIYNRIYRQFIGKSFIENIRYERYVTLQENLLSDVLKSKLEVNSVGMGRTMIQNGFSRKKLLIVLDDVSGFDQLENLYGSREWFGQGTVIIITTRNVSLWNRLEVNYVYQTHLLNENESLELFSWHTFRVAKPKKEWSLLARNVVVYCRGLPLALQCLSSCLCDRTIEVWESVLLKLQRIPPNELLSVLKISFEDLRDTEKDIFLDVCCFFIGKDRDYVTEILNGCGLHADIGITLLIERGLIKVEKNNKLQMYSLLQDMGREIIRQECPEKPGKRSRLWFQNDVEDVLKENTGTEAIKGLSLKHSRIRGCFEAHAFKEMKRLRLLQLDNVQLRGDCGHISKQLRWICWRGFPYRYIPKDFHLENLIAIDFKHSLLYLWEQRVVLERLKFLNLSHSKYLKETPDFSRLPSLEQLILKDCPRLLKVHSSIGDLSNIVLINLKDCRSLSYLPREMHKLRSLKTLIVSGCCSKLRPLEKI* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0875 711 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 440 IPR027417 -
Vra9g0875 711 Gene3D Ribonuclease Inhibitor 511 710 IPR032675 -
Vra9g0875 711 Gene3D - 10 186 IPR035897 -
Vra9g0875 711 Pfam TIR domain 17 181 IPR000157 GO:0007165
Vra9g0875 711 Pfam NB-ARC domain 199 413 IPR002182 GO:0043531
Vra9g0875 711 Gene3D - 188 342 IPR027417 -
Vra9g0875 711 PRINTS Disease resistance protein signature 218 233 - -
Vra9g0875 711 PRINTS Disease resistance protein signature 289 303 - -
Vra9g0875 711 PRINTS Disease resistance protein signature 382 396 - -
Vra9g0875 711 PRINTS Disease resistance protein signature 617 633 - -
Vra9g0875 711 ProSiteProfiles TIR domain profile. 15 184 IPR000157 GO:0007165
Vra9g0875 711 CDD AAA 196 330 - -
Vra9g0875 711 SUPERFAMILY L domain-like 500 702 - -
Vra9g0875 711 Gene3D - 347 431 IPR042197 -
Vra9g0875 711 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 20 704 - -
Vra9g0875 711 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 704 IPR044974 GO:0006952
Vra9g0875 711 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 161 IPR035897 -
Vra9g0875 711 SMART till_3 16 158 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0875 Vra-Chr9 10342053 10344874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0875 17 711 WRKY Transcription Factor Family AT4G12020 29.903 4.23e-82 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0875 - - vun:114165946 1039.64