Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0870 ATGGCTTCCCCTTTGCTTCCCTTGCTCTTCCTTTCAATGATTCTGTTACCCTTTCAACTCATCAGTGTTGTAGCCCAAACCAAAACCAACTTGGTTATTGGTGATTCTCATACTGCAGGAAAAGACTCAGCCCCATGGTTGGTTTCATCACCTTCTGGTGACTTTTCCTTTGGTTTCCTCCCACTTGAGGACTCTACTGATCATTTCATACTTTGCATTTGGTATGCAAAGATTCAAACCAAGACCATAGTTTGGTTTGCTAATAGGGACAAGCCTGCACCAAAGAACACAAAGGTGGAGCTTACAGCTAATGATGGGTTGGTGCTCACTGCCCCAAATGGTGACCGGTTATGGAATACTGTTACCAGTTCTAGAGTTTCTGGGGGTTCTTTTAATGACACTGGCAACTTAGTGCTTCAGGATGGTGATTCCAACACTGCATGGGAGAGTTTCAAGGATTATAGGAACACCTTGCTGCCCTATCAGACTCTGGAAAGGGGTCAAAAGCTTTCTTCTATGCTTAGGGAGAATGATTTCAACAGGGGCAGGTTTGAGCTATTTTTCCAAAATGATGGTAATCTTGTGATGCACTCTATAAATTTACCATCTGGGTATTCTAATGAAAACTACTATGAAAGTGGAACCGTCGAGTCCAACACTTCTGGTGCTGGGACACAATTGGTGTTTGATAGCTCAGGAGATATGTATATTGTGAGAGCGAACAATGGAAGGTATAATTTGTCAGAAGATGGTGCTGGGGTTTCTACCACTCTATTTTACCTTAGAGCAATTCTTGATTTTGATGGGGTGTTCACACTCTATCGATATCCTAAGGGTTCTTCTGACCGTGGAGGTTGGACCCCAGTGTGGTCTCATCCAGATAATATCTGTAAGAACTATCTTGCTGGTGCGAGTAGTGGTGTTTGTGGATATAATAGCATATGCAGTTTAAGAGATGATAAGAAACCAACTTGTCAGTGTCCAAAATGGTACGTGTTGACTGACCCTAAGGATCCCTACGGTAACTGCAAACCAGATTTTGTACAAGAATGTTTTGAAGATGATCTTAGTAACAGAAAGAATCAATATGATTTTGAGGTGTTGACAGATACTGATTGGCCTCTTTCAGATTATGAGCTTCAAAGACCCTTTAATGAAGACCAATGCAAACAATCTTGTATGGAAGATTGTATGTGTTCTGTTGCCATTTTCAGGCTAGGTGACAGCTGCTGGAAGAAGAAGCTGCCACTTTCAAATGGTAGAGTTGATCCCACGCTTAATGGTGGAAAGGCCTTCATGAAAGTGAGGAAGGACAATTCCTCCTTGATTAGTCCTCCAACAATCATTGTGAAGAACAATAGGAATACTTTGATTTTGATTTTGTCAGTGCTTTTGGGCAGTTCTGCTTTCCTCAATCTAATATTGGTCTTTGCAATCTGCTTGAGCACTTCCTACGTTTTCCAGTATAAGAAGAGGCTTAGAAGAGCTGGAAAAACTGACACTACTGTGGAGACCAACTTGCGTTGCTTCACTTATGAGGAACTTGAAGAAGCCACTGATGGCTTTGACAAAGTTCTAGGGAAGGGAGCTTTTGGCGTTGTGTATGAAGGAGTCGTCAACATAGGTTCTGTTACTCGTGTGGCTGTGAAACGATTGAACACTTTTCTCTTGGAAGAGGTTCAGAAGGAATTCAAGAATGAACTGAATGTCATTGGCCTCACACATCACAAGAACTTGGTTCGTATACTTGGATTTTGTGAGACTGAATCAGAAAGGATACTTGTTTATGAGTACATGAGCAATGGCACTTTAGCAAGTCTTCTTTTTAATGTCGAGAAACCAAGTTGGAAACTGAGGCTACAAATTGCATCTGGGGTTGCTAGAGGACTTCTATATCTGCATGAAGAGTGCATCACACAGATCATCCATTGTGACATAAAGCCTCAGAACATACTCCTTGATGATTACTATGTTGCAAGAATATCAGACTTTGGATTGGCCAAGCTTTTGAACATGAACCAGAGCAGAACCAACACTGCAATAAGGGGAACAAAAGGGTATGTTGCACTTGAATGGTTCAAAAACATGCCAATCACGGCTAAAGTGGATGTCTATAGTTATGGGGTGCTGTTGCTTGAGATAGTTTCATGCAGAAAAAGTGTGGAATTTGAGTTAGAAGATGAATCCAAAGCAATCCTAAGTGAATGGGCTTATGAGTGCTACTCTGAAGGTACTCTTCATGCCTTGGTTGAGGATGATAAAGAGGCATTGGATGACATGAAGACAGTGGAGAAGTTGGTGATGATTGCCCTTTGGTGTGTGCAAGAGGATCCTGGTTTTAGACCAACAATGAGAAATGTGACACAGATGCTTGAAGGTGTTGTTGAAGTGCAAGTGCCACCATGCCCCTCACAAATCAGTGTTCAATATTCCCTAAACCTAGTCATGGTTTCATCTCTATTTGCCTTTCTTCTTTGCTCAATGGTGCTGCTAAACATTTTTGTTGTAGCCCAAACCAGAAGCAGTAAAATCATTGATCAGTCTCTTCTGAAAGAAACCATCAAAGCCTCATGGGTAGTTTCATCTTCTGGTGAGATAAACCAAACCAGAAGAAACATAACTGTTGGTGATTCACTTTTTGCAGAAACAACTAGCAGCAACTCCTCAACGTGGGTGGTTTCACCTCTTGGCCACTTTGCCTTTGGGTTTCTTCCAGTTGAGGACACTGACCATTTCTTACTTTCCATTTGGTATGCTAAGATTCCTGGCAAGACTGTAGTTTGGTATGCCAATGGAGACACTCCTGCTCCAAAGGGGTCAAAGGTTGAACTCACTGGTGATGATGGATTAGTCCTCACTGCCCCAAATGGTGATCTGTTATGGAAAACTAAGACCCTTAGTGGTAAAGTTCATCACGGGTTTTTAAAGGACAACGGAAACTTTGTTCTTGTGAATGAAAATCATCAAGGTGTGTGGGAGACGTTTAAGCATCCAAGGGACACGTTGTTGCCCACACAAACTCTAGAAAAAGGTGAGAAGCTTTCATCAAGATTTGTAGAGTTAAATTACTCAGAAGGAAGGTTTGAGATGATGCTTCAAATGGATGGTATTCTTTCCATTCATGCTTTAAACCCGCCATCTGGGTATGCCAATGAAAACTACTACGAAAGTAGGACTGAAGAGTCCAACACCTCAAGTCCTGGAATTCGTTTGGTGTTTGAACCATCAGGGTACGTGTATGTTTTGAGGAAGAACAGTGAGAAATACAACTTGTCAACATGGAGTGGAGCCTCTACTACTGATGAATCTTACTTCAGAGCAACTCTTAATTTTGATGGTGTGTTTACACTCTATCAACATTCAAAGAGTTCGTTTGGGAGTGATGGATGGAGTGCTGTTTGGTCTCAGCCAGATAACATCTGTCTCAGCAGGCTTGCCACTGAAGGTAGTGGTGTTTGCGGGTTCAATAGTGTGTGTACGTTGGGAAGTAATCAAAGGCCAAGTTGTCAATGCCCAAAATGGTACTCTTTGGTTGACCCTAATGACCCCTATGGTAGCTGCAAGCCAGATTTCATACAAGGATGTGCAGAAGATGAACTCATTGGAAAAGCAGATGCAGCTGGATATGATTTTGAGGTGTTGGTAAATACAGATTGGCCTCTTTCAGATTATGTGCTTCTTAAACCCTTTACTGAAGAACAATGTGAACAGTCATGTTTGGAAGATTGTATGTGTGCAGTTGCCATCTACAAATCAGGTAGTGATTGCTTCAAGAAGAAGTTGCCTCTTTCAAATGGTAGAGTTGATGTTGGACTTAATGGTGCAAAGACTTTCATCAAAGTGAGGAAAGATAATTCCTCTTTGATTGTTCCACAAGTGAAAGTGAATGAGAATAGTAAGAGCTCTTTGAGTTTGGTTGCTTGGGTACTTTTTGGAAGCTCTTCATTTCTCAATGTCATATTTATTGGAGCCTTATGCATGTGCTTTTTCTACATCTTTCAGTACAAGAAGAAGCTTAGAGGAATCGGCAAAAGTGCCAATGCCCTTGAAACTAACTTGCGTTGCTTCTGTTATGAGGAGCTTGAAAGAGCTACAAATGGTTTCCAGAAAGAGTTAGGAAGAGGGTCTTTTGGTGTTGTCTATGAAGGAGTCATAAACATAGGCTCAGCAATTCCAATAGCAGTGAAAAAGCTGAACACTTTGCTTTTCCAACAGGTTGAGATGGAGTTCAAGAACGAGTTACATGTCATTGGTCTCACTCATCACAAGAACTTGGTGCGGTTGATAGGCTATTGTGAGGCAGAAAAAGAAAGATTGTTGGTTTATGAGTACATGAGCAATGGCACTTTGGCAAGTCTTATTTTCAGTGAGGTGAAACCTGAGTGGAAACTAAGGTTAGAGATTGCATCTGGGGTTGCTAGAGGACTTGCATATTTGCATGAAGAGTGCATCACTCAGATTATCCACTGTGACATAAAGCCACAAAACATACTCATTGATGAGTACTATAAGGCCAGAATTTCTGACTTTGGATTGGCCAAGCTCTTGAAGATGAACCAAAGCAGAACCAACACTGCCATAAGGGGAACAAAGGGGTATGTGGCAGTAGAATGGTTTAAAAACATGCCTATCACAGCTAAAGTGGATGTCTATAGTTATGGTGTGTTGTTGCTTGAGATCATTTGCTGCAGAAGAAATGTAGAAATGGATCTAGAAGAGGAAGAGAAGGTTATACTAATTGATTGGGCTTGTGATTGCTATTCAAGAGGTACTTTTGATCACTTGGTTAAAGATGACAAGGAGGCATTGGATGACAAAAAGAACATGATGAAGTTGGTGATGATTTCCATTTGGTGCATTCAAGAGGATCCAATTCTTAGACCAACCATGAGAAAAGTGACACAGATGCTTGAAGGTATTGTAGAAGTCGAACCTCCACCATTCCCCTCACAATTTAGTAGAGATTCTCAAAATCTGTGA 4980 0.4133 MASPLLPLLFLSMILLPFQLISVVAQTKTNLVIGDSHTAGKDSAPWLVSSPSGDFSFGFLPLEDSTDHFILCIWYAKIQTKTIVWFANRDKPAPKNTKVELTANDGLVLTAPNGDRLWNTVTSSRVSGGSFNDTGNLVLQDGDSNTAWESFKDYRNTLLPYQTLERGQKLSSMLRENDFNRGRFELFFQNDGNLVMHSINLPSGYSNENYYESGTVESNTSGAGTQLVFDSSGDMYIVRANNGRYNLSEDGAGVSTTLFYLRAILDFDGVFTLYRYPKGSSDRGGWTPVWSHPDNICKNYLAGASSGVCGYNSICSLRDDKKPTCQCPKWYVLTDPKDPYGNCKPDFVQECFEDDLSNRKNQYDFEVLTDTDWPLSDYELQRPFNEDQCKQSCMEDCMCSVAIFRLGDSCWKKKLPLSNGRVDPTLNGGKAFMKVRKDNSSLISPPTIIVKNNRNTLILILSVLLGSSAFLNLILVFAICLSTSYVFQYKKRLRRAGKTDTTVETNLRCFTYEELEEATDGFDKVLGKGAFGVVYEGVVNIGSVTRVAVKRLNTFLLEEVQKEFKNELNVIGLTHHKNLVRILGFCETESERILVYEYMSNGTLASLLFNVEKPSWKLRLQIASGVARGLLYLHEECITQIIHCDIKPQNILLDDYYVARISDFGLAKLLNMNQSRTNTAIRGTKGYVALEWFKNMPITAKVDVYSYGVLLLEIVSCRKSVEFELEDESKAILSEWAYECYSEGTLHALVEDDKEALDDMKTVEKLVMIALWCVQEDPGFRPTMRNVTQMLEGVVEVQVPPCPSQISVQYSLNLVMVSSLFAFLLCSMVLLNIFVVAQTRSSKIIDQSLLKETIKASWVVSSSGEINQTRRNITVGDSLFAETTSSNSSTWVVSPLGHFAFGFLPVEDTDHFLLSIWYAKIPGKTVVWYANGDTPAPKGSKVELTGDDGLVLTAPNGDLLWKTKTLSGKVHHGFLKDNGNFVLVNENHQGVWETFKHPRDTLLPTQTLEKGEKLSSRFVELNYSEGRFEMMLQMDGILSIHALNPPSGYANENYYESRTEESNTSSPGIRLVFEPSGYVYVLRKNSEKYNLSTWSGASTTDESYFRATLNFDGVFTLYQHSKSSFGSDGWSAVWSQPDNICLSRLATEGSGVCGFNSVCTLGSNQRPSCQCPKWYSLVDPNDPYGSCKPDFIQGCAEDELIGKADAAGYDFEVLVNTDWPLSDYVLLKPFTEEQCEQSCLEDCMCAVAIYKSGSDCFKKKLPLSNGRVDVGLNGAKTFIKVRKDNSSLIVPQVKVNENSKSSLSLVAWVLFGSSSFLNVIFIGALCMCFFYIFQYKKKLRGIGKSANALETNLRCFCYEELERATNGFQKELGRGSFGVVYEGVINIGSAIPIAVKKLNTLLFQQVEMEFKNELHVIGLTHHKNLVRLIGYCEAEKERLLVYEYMSNGTLASLIFSEVKPEWKLRLEIASGVARGLAYLHEECITQIIHCDIKPQNILIDEYYKARISDFGLAKLLKMNQSRTNTAIRGTKGYVAVEWFKNMPITAKVDVYSYGVLLLEIICCRRNVEMDLEEEEKVILIDWACDCYSRGTFDHLVKDDKEALDDKKNMMKLVMISIWCIQEDPILRPTMRKVTQMLEGIVEVEPPPFPSQFSRDSQNL* 1660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0870 1659 Gene3D Transferase(Phosphotransferase) domain 1 599 799 - -
Vra9g0870 1659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1487 1499 IPR008271 GO:0004672|GO:0006468
Vra9g0870 1659 Gene3D Transferase(Phosphotransferase) domain 1 1445 1647 - -
Vra9g0870 1659 SUPERFAMILY Protein kinase-like (PK-like) 507 823 IPR011009 -
Vra9g0870 1659 CDD B_lectin 47 151 IPR001480 -
Vra9g0870 1659 SUPERFAMILY Protein kinase-like (PK-like) 1353 1651 IPR011009 -
Vra9g0870 1659 ProSiteProfiles Protein kinase domain profile. 520 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0870 1659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 641 653 IPR008271 GO:0004672|GO:0006468
Vra9g0870 1659 Gene3D Phosphorylase Kinase; domain 1 494 598 - -
Vra9g0870 1659 Gene3D Phosphorylase Kinase; domain 1 1342 1444 - -
Vra9g0870 1659 ProSitePatterns Protein kinases ATP-binding region signature. 526 550 IPR017441 GO:0005524
Vra9g0870 1659 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 215 IPR036426 -
Vra9g0870 1659 SUPERFAMILY alpha-D-mannose-specific plant lectins 912 1045 IPR036426 -
Vra9g0870 1659 Gene3D - 873 997 IPR036426 -
Vra9g0870 1659 Gene3D - 29 152 IPR036426 -
Vra9g0870 1659 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 861 1653 - -
Vra9g0870 1659 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 14 807 - -
Vra9g0870 1659 SMART serkin_6 520 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0870 1659 SMART serkin_6 1366 1626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0870 1659 Gene3D - 154 280 IPR036426 -
Vra9g0870 1659 CDD B_lectin 884 998 IPR001480 -
Vra9g0870 1659 ProSiteProfiles Protein kinase domain profile. 1366 1641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0870 1659 ProSiteProfiles Bulb-type lectin domain profile. 876 996 IPR001480 -
Vra9g0870 1659 ProSitePatterns Protein kinases ATP-binding region signature. 1372 1397 IPR017441 GO:0005524
Vra9g0870 1659 ProSiteProfiles Bulb-type lectin domain profile. 22 152 IPR001480 -
Vra9g0870 1659 Pfam Protein kinase domain 1369 1635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0870 1659 Gene3D - 999 1139 IPR036426 -
Vra9g0870 1659 Pfam Protein tyrosine and serine/threonine kinase 522 791 IPR001245 GO:0004672|GO:0006468
Vra9g0870 1659 SMART blect_4 882 998 IPR001480 -
Vra9g0870 1659 SMART blect_4 36 155 IPR001480 -
Vra9g0870 1659 Pfam D-mannose binding lectin 925 1010 IPR001480 -
Vra9g0870 1659 Pfam D-mannose binding lectin 82 167 IPR001480 -
Vra9g0870 1659 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RLK1 861 1653 - -
Vra9g0870 1659 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RLK1 14 807 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0870 Vra-Chr9 10260944 10269273 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0870 506 820 Receptor kinase-like Gene Family AT1G60800 39.823 9.12e-69 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vra9g0870 Pkinase 5.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0870 - - vra:106773297 3346.98