Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0845 ATGGAAGAACACGAAGAGAAAACCATCGTCACCAAGTTCGCAAAATCCAAATTTTTCTTTCCCAAAGTTATTCGCATTTCAGCAACGGATCACAACGCCACAGACTCCTCTAGCGAAGAAGAAGACGAAGAAAGGAAGCTTCTTCACCTTCACAGAGTTAAGAAAGTGGTTAGTGAGATAAGAATTGTGCATGCAAACAAAACGAAAGGACACAACAAAAACATCAACAATAATACTGATTGTTGTTGTTCGACCAAATACAAGAAAACCATGGAACAACACCACCAACAAGAAAAAACAGAGCAACAAGAAAAAACAGAGTCCAAGTTTCGCGGCGTGCGGCAACGGCCATGGGGGAGGTGGGCCGCCGAGATAAGAGACCCTTTCCAGCGGAAGCGAGTGTGGCTTGGAACCTTCGACACGGCGCAAGAAGCTGCTATGGTTTACGACAGAGCTGCTATAAGCTTCAGAGGTGCTGATGCTGTCACCAATCTCATCAAACCACCTGTGAAAGACTGTGAAAGTGTTGCTAAACCGAAGAGTTGTTGTGCATGCGCTTCACCCACTTCTGTTCTGTTGTTTCAGCCATGGATGGAACCTTTGTCTTTGGAAGAAACCTTCAAAGAAGAAGTGTTTGATGGGTTAAACTATGAAGTTGATAGTTTATTGTTTTCTGATCATGCTCTTTATGAGCAACCTCTTCCTACTGTGTTTTCTAACGTTGATGTTTCTTTGGATGAGGATCTTGAATCATGTAAATGGGATGTAGATAGTTTTTTCAGTGATGAAGCTTTTCAATAA 801 0.4245 MEEHEEKTIVTKFAKSKFFFPKVIRISATDHNATDSSSEEEDEERKLLHLHRVKKVVSEIRIVHANKTKGHNKNINNNTDCCCSTKYKKTMEQHHQQEKTEQQEKTESKFRGVRQRPWGRWAAEIRDPFQRKRVWLGTFDTAQEAAMVYDRAAISFRGADAVTNLIKPPVKDCESVAKPKSCCACASPTSVLLFQPWMEPLSLEETFKEEVFDGLNYEVDSLLFSDHALYEQPLPTVFSNVDVSLDEDLESCKWDVDSFFSDEAFQ* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0845 266 ProSiteProfiles AP2/ERF domain profile. 109 166 IPR001471 GO:0003700|GO:0006355
Vra9g0845 266 SMART rav1_2 109 172 IPR001471 GO:0003700|GO:0006355
Vra9g0845 266 PRINTS Ethylene responsive element binding protein signature 110 121 IPR001471 GO:0003700|GO:0006355
Vra9g0845 266 PRINTS Ethylene responsive element binding protein signature 132 148 IPR001471 GO:0003700|GO:0006355
Vra9g0845 266 Gene3D AP2/ERF domain 108 166 IPR036955 GO:0003700|GO:0006355
Vra9g0845 266 SUPERFAMILY DNA-binding domain 108 165 IPR016177 GO:0003677
Vra9g0845 266 Pfam AP2 domain 108 158 IPR001471 GO:0003700|GO:0006355
Vra9g0845 266 PANTHER - 14 263 - -
Vra9g0845 266 CDD AP2 108 164 IPR001471 GO:0003700|GO:0006355
Vra9g0845 266 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 14 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0845 Vra-Chr9 9915993 9916892 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0845 5 213 AP2-EREBP Transcription Factor Family AT4G27950 39.662 6.95e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra9g0845 AP2 4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0845 - - pvu:PHAVU_010G035200g 389.037