Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0838 ATGCTTTCCTTTAAGGTAGTGAAGCTCGTTCACGGCGAGAGCACCACTGTGCTCCTTTCCCTAGTGGTTTTCCGCCACCTCGGAAATGTCATCACGTTGTTGGCGGACTTGCGGATGGTCTCTCCAAGCGTGGTGGTTTTGGTGGATAGCGAGGGGTGGGCGGATATGGCTACAGTAGCAGCCTCGTCGTTCCGATGTAGCGTCGTGAGCAGTTTGGACTACTACTCGATGATGTTGGAGTCGTTGTATGTGTTTACAGCTAGGGGAGGAGGGGAGTGGGTGAGGAGAATCAAGATGATGCATCTGTAA 309 0.5275 MLSFKVVKLVHGESTTVLLSLVVFRHLGNVITLLADLRMVSPSVVVLVDSEGWADMATVAASSFRCSVVSSLDYYSMMLESLYVFTARGGGEWVRRIKMMHL* 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0838 102 Pfam GRAS domain family 3 87 IPR005202 -
Vra9g0838 102 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 102 IPR005202 -
Vra9g0838 102 PANTHER SCARECROW-LIKE PROTEIN 15 1 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0838 Vra-Chr9 9829348 9829656 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0838 1 97 GRAS Transcription Factor Family AT4G36710 47.423 2.33e-22 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vra9g0838 GRAS 1.5e-07 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0838 - - vra:106773283 199.519