Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0805 ATGGTTTTGGTTGATGAAATGAATGAGGCATGTAATACGGAAGAAGAGAATAGTTTAAGTTTGGTTCCTAGTTTGGACATGTCATTTGACACAATGGAAGATGCAAAGAAATTTTACCACGAATACGGTAAGAGATGTGGATTTGGCATTCGAACCAGAACCTCAAAAAAGGATAGGAACAACATAGTCTACTACTTGAGATTGGTTTGTTCCAGGGAAGGTAAATATGTTTCCAGCGTTCGTCCAGAGGTAAAAACTCTACCAAGTCAGACTAATGAATGTCCTGCTGGAATAACCATAGCACGGAAAAATGAGAAATGGTTTGTCAGAACTGTAGTTTTAGATCACAGTCATGACCTGTGTCCACAAACCTCCAATCTAATCCGTGGTAACAGGCAATTGAACATGCATGCGAAGCACACTTTGGAAGTGAATGATGATGCTGGAGTTCGTATTAATAAGAGTTTCCTTAGCATGGTTAGTGAAGCGGGTGGATATGAAAACATGCAATTTGTTGAACGAGATGCTAGGAACTTCATTGGTCAGCATAGAAGGTCCCTGTGTAAGGAAGGTGATGGACAGGCATTGCTTCGACACTTCTCAAAAATGAGAGACCAGAATAATGAATTCTTTTATGACATCGAGATGGATGAAGATAATAGAATTACTAATGTCTTTTGGGCAGATGCTCGAAGCCGAGCTGCTTCTGAGGAGTTCGGTGATGTCGTGTCGTTTGACACCACGTACTTAACCAACAAGTACGACATGCCATTCGCTCCATTTGTGGGAGTTAATCACCATGGACAGTCAATCTTACTTGGTTGTGGATTGCTTTCATCAGAGGACACTAATTCATTCATATGGTTATTTAATTGTTGGTTAAGATGCATGGGGAACAAGGCGCCCAACAGTATTGTAACCGATCAATGCAAGGCCATGGCTAATGCAATTGAAGAAGTTTTCCCAAACACAAAACATAGGTGGTGTTTGTGGCACATAATGAAAAAAATACCCGAAAAATTCCAAGGATATAAGAATTATGTTGGGATCAAGTCTGATATCAAAGCGGTTGTCTATGAGTCTGCTACTGCAATTGACTTTGAAACTGGTTGGAAACGACTACTTACCACACATTTCTTGGAAAGTAATGATTGGCTATGTAATTTGTACGAAGAGAGAGCGAAATGGGTTCCATGCTACTTGAAGAACCACTTTTGGGCTGGTATGTCAACTACTCAAAGAAGCGAGGGTATGAATGCTTTCTTTGATGGTTTTATTAATTCCACTACCACCTTGCAACAATTTGTGATTCAATACGATAATGCTCTTAAGGTTAAGGCACAAAAGGAATTAGAAGCTGATTTTGCCTCTCTAAATACAACAGTTGCATGTGGGTCTCAATCACCAATTGAGAGACAATTTCAAGTTGAGTACACTCATGCAAAATTTGAGGAAGTACAAAATGAGTTTCGATCAAGGATGAATTGTTTCATTAAAGAGACATTGAAGGAAAGTATTCTCAACACGTACACAATCAAAGAAGAGTGCATGTGGGAGGGAAAATGTGTGCCAAAATATTATCATGTTCAATTTGATCCTGTTTTAAAAGAAATTACTTGCTCCTGCCTTTTGTTTGAGTTTAGAGGCATTATATGCAGGCATTCGCTATTGGTTCTAGGTCAGGAAGATGTTCATCATGTACCCTCAAAATATGTACTGTCCCGTTGGAGCAAAAACATCAGAAGAAAGCATACACTTATTAGAGCAGCTTATAGTTCTTTACAACTTGATCCCAAGATGCAAAGATACCAAACTTTGTGTAAGCAGTTCTATAATCTGGCTGAGGCTGCATGTGAATCTGAATGTGCTTCTGATCAGTTGGAAAAAGATTTGAAATGTCTTGCTCAAAAGTTTGGGGTGACCTCAAGTCTGAAAAATAATATCGTAAGTGAGGGAGGACAATTAAGGTATGAGAACGCCGTTCCTCAAAATACGTCCTACAATACATGCGGAAGTAGTGACGTACTTGTTCGCAGTCCCGTCGCGGTTAAGCGAAAAGGCCGACCAAGAACTAACAGATTGAAATCAACCGTTGAAAGAAGGTGCCAAAAGAAATCAAAGGGAAGTAAAAGAAATTCTTCAACAACACCTTTAGAACCCAATGTAGCCACAGCATTTAATGGAGCACAAAACCCCCAGGACATGGAATCTGCATCCCAAACAATACAGATATCCCAACTATCTGAAGTTGCTCCTAATGGCTTCATGTCGTTGCTCTCTGCGGTCCATAACACTTTTGAGAATATATAA 2310 0.3961 MVLVDEMNEACNTEEENSLSLVPSLDMSFDTMEDAKKFYHEYGKRCGFGIRTRTSKKDRNNIVYYLRLVCSREGKYVSSVRPEVKTLPSQTNECPAGITIARKNEKWFVRTVVLDHSHDLCPQTSNLIRGNRQLNMHAKHTLEVNDDAGVRINKSFLSMVSEAGGYENMQFVERDARNFIGQHRRSLCKEGDGQALLRHFSKMRDQNNEFFYDIEMDEDNRITNVFWADARSRAASEEFGDVVSFDTTYLTNKYDMPFAPFVGVNHHGQSILLGCGLLSSEDTNSFIWLFNCWLRCMGNKAPNSIVTDQCKAMANAIEEVFPNTKHRWCLWHIMKKIPEKFQGYKNYVGIKSDIKAVVYESATAIDFETGWKRLLTTHFLESNDWLCNLYEERAKWVPCYLKNHFWAGMSTTQRSEGMNAFFDGFINSTTTLQQFVIQYDNALKVKAQKELEADFASLNTTVACGSQSPIERQFQVEYTHAKFEEVQNEFRSRMNCFIKETLKESILNTYTIKEECMWEGKCVPKYYHVQFDPVLKEITCSCLLFEFRGIICRHSLLVLGQEDVHHVPSKYVLSRWSKNIRRKHTLIRAAYSSLQLDPKMQRYQTLCKQFYNLAEAACESECASDQLEKDLKCLAQKFGVTSSLKNNIVSEGGQLRYENAVPQNTSYNTCGSSDVLVRSPVAVKRKGRPRTNRLKSTVERRCQKKSKGSKRNSSTTPLEPNVATAFNGAQNPQDMESASQTIQISQLSEVAPNGFMSLLSAVHNTFENI* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0805 769 Pfam SWIM zinc finger 527 559 IPR007527 GO:0008270
Vra9g0805 769 Pfam FAR1 DNA-binding domain 37 121 IPR004330 -
Vra9g0805 769 MobiDBLite consensus disorder prediction 709 741 - -
Vra9g0805 769 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 12 621 IPR031052 GO:0006355
Vra9g0805 769 ProSiteProfiles Zinc finger SWIM-type profile. 527 563 IPR007527 GO:0008270
Vra9g0805 769 SMART 26again6 538 565 IPR006564 GO:0008270
Vra9g0805 769 Pfam MULE transposase domain 242 336 IPR018289 -
Vra9g0805 769 MobiDBLite consensus disorder prediction 685 741 - -
Vra9g0805 769 PANTHER OS03G0843700 PROTEIN 12 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0805 Vra-Chr9 9413069 9415475 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vra9g0805 MULE 1.2e-34 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0805 - - var:108341250 1245.34