Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0787 ATGGGAACAAAGGCAAAGAAAGCTATGAAGAAGAACATGAAAAGGGCTTCCTCTAACAAGCCATCTGAAGGTGCTGATTTTTTGCCCTTAGAAGGTGGTCCTGCTCGCAAGTTCGCCGAACAGAAGCCGCCGGAGAATACCTCCGCGGTATTGCACGTATCCAGGATTCCGCATGGATTCTATGAGAAGGAGATGGAAGGTTATTTTGGTCAATTTGGAACCATCAAAAGGTTGAGAATCGCGAGAAATAAAAAGACAGGAAAATCAAGACATTTTGGATACATAGAATTTGAATCTCCTGAGGTTGCGAAAATTGTAGCTGATACTATGCACAATTATCTCCTTTTCGAGCACCTTCTCCAAGTTCATGTTGTACCTCCGGAGAATGTTCATTCAAGATTATGGAGAGGATTCAGTTATCGTCACAAGCCATTGGATTATGTCCAAATTGAACGGAAGCGTCATGACAAGGAAAGAACCTTAGAAGAGCACAAAAAGTTGGTGGAGAGGATTCTAAAACATGACCAAAAACGACGGAAAAAGATAGAGGCTGCTGGCATTGATTACGAAAGCCCTGAGATTATGGGTAACATCCAGCCTGCTCCAAAGAAAATAAAGTTTGACGACTGA 630 0.4238 MGTKAKKAMKKNMKRASSNKPSEGADFLPLEGGPARKFAEQKPPENTSAVLHVSRIPHGFYEKEMEGYFGQFGTIKRLRIARNKKTGKSRHFGYIEFESPEVAKIVADTMHNYLLFEHLLQVHVVPPENVHSRLWRGFSYRHKPLDYVQIERKRHDKERTLEEHKKLVERILKHDQKRRKKIEAAGIDYESPEIMGNIQPAPKKIKFDD* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0787 209 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Vra9g0787 209 SUPERFAMILY RNA-binding domain, RBD 32 137 IPR035979 GO:0003676
Vra9g0787 209 CDD RRM_NIFK_like 50 123 - -
Vra9g0787 209 Coils Coil 147 170 - -
Vra9g0787 209 PANTHER - 1 208 - -
Vra9g0787 209 SMART rrm1_1 50 123 IPR000504 GO:0003723
Vra9g0787 209 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 1 208 - -
Vra9g0787 209 Gene3D - 3 124 IPR012677 -
Vra9g0787 209 MobiDBLite consensus disorder prediction 1 44 - -
Vra9g0787 209 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 118 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0787 51 122 Eukaryotic Initiation Factors Gene Family AT1G71770 30.556 3.69e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0787 K14838 - gmx:100778780 361.303