Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0780 ATGGCTTCGCCGCCACCGTTAACGCTAAACGTCGTCGGATCAGACACGGACACCGAGTTCCCCACCGTCGCTTCCAGTTCCCTAACGCCGCCGTCACCGCGCCGTTCCTCTCCGTTACAGAGCCTCAGTCCCAGCATTCTCATCATCGTCACGGTCCTCGCCGTCACCGTTATTGTTTCTCTCGCGCTCTGCTTCCTCCTCCGCCACCTCAACCGCCGCTGCCTCCGCCGTTTCTCCTCCTCATCCGCCGCGCCCTCCGCATCCGCCTCCGCTACGCCGATATTCTCCTCCAGCCGCCGCATCTCGCCGGAGATTGTCCACTCCTCGTCCACCGCCGCTGTCGCCGCCTCAGTCATCGACACGCTGCCGCTATTCACGTTCTCCTCCGTCACGCGCCGCTCTTCCTCCGCCGCCGCCGACTGCGCGGTCTGCCTCTCCAAGTTCCACCACCACGACCTCCTCCGCCTCCTCCCTCTCTGCTGCCACGCCTTCCACGCCGAGTGCATCGACACCTGGCTCCAGTCCAACCTTTCGTGTCCGCTCTGCCGCTCTCCCATATCCGCCGCGGAATCCGACATTGCCAAAATCCTCCGCCCGCCGTCCTCCACCGCCGGCAGCAGCGACAGCTTCCGCCTCGAGTTAGGCAATATCAGCCGCCGTGGCGCCGAAGGCGCCGCGGCCACCGCCGCTCGCGGAGATTCACGGTCCCGGTCCTATTCCATTGGTTCGTTTGATTATTTGGTAGATGATGAGTCTGAGGTTGCTTTCAGCCACGCCCGCCGGAGGAGCGAGGACGATGCGAAGGAGTTTCTGGCCACCGAGACTCAGACCCCGTCCACTCACAACGAGGCGAGTCTGGCCAGCGAGGTCGCCGGCGTGAGGAGCTGGCTTAAGGACTACATGGATAGGTTTTCTGCTTCTATCTCGTCAAGAACAGCGTCTTTTCGAAGCTCCGGAAGGTTCTTCAGCGGTGGCGGGAGTAGTCGGCGAAGCGACGTCGTTCCAGTGGTGGCTGCGGAATACGACTTGGAAGGAAACCGAATCGGTGAAGAGATAAGCGAAATGTTCCGATGGCTTTCAGGGGTATGA 1089 0.6217 MASPPPLTLNVVGSDTDTEFPTVASSSLTPPSPRRSSPLQSLSPSILIIVTVLAVTVIVSLALCFLLRHLNRRCLRRFSSSSAAPSASASATPIFSSSRRISPEIVHSSSTAAVAASVIDTLPLFTFSSVTRRSSSAAADCAVCLSKFHHHDLLRLLPLCCHAFHAECIDTWLQSNLSCPLCRSPISAAESDIAKILRPPSSTAGSSDSFRLELGNISRRGAEGAAATAARGDSRSRSYSIGSFDYLVDDESEVAFSHARRRSEDDAKEFLATETQTPSTHNEASLASEVAGVRSWLKDYMDRFSASISSRTASFRSSGRFFSGGGSSRRSDVVPVVAAEYDLEGNRIGEEISEMFRWLSGV* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0780 362 MobiDBLite consensus disorder prediction 1 40 - -
Vra9g0780 362 SUPERFAMILY RING/U-box 119 188 - -
Vra9g0780 362 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 12 330 - -
Vra9g0780 362 MobiDBLite consensus disorder prediction 9 40 - -
Vra9g0780 362 Pfam Ring finger domain 140 183 IPR001841 -
Vra9g0780 362 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Vra9g0780 362 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL4 12 330 - -
Vra9g0780 362 CDD mRING-H2-C3H2C2D_ZSWM2 141 183 - -
Vra9g0780 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 193 IPR013083 -
Vra9g0780 362 SMART ring_2 141 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0780 Vra-Chr9 8994356 8995999 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0780 25 212 C3H Transcription Factor Family AT4G28890 33.508 1.84e-23 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0780 K10663 - gmx:100817751 421.779