Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0774 ATGGAAGACTCGTGGGAAAGTTGGATTTCTTCTTTGAAAATGGTCGAAGACAGCTCCACTGATCATTCTCACATCAATGATGATAACTTCCTCACTGGGATTCTTCTTGAACCACTAGATTTCTCATTCCATAACTCTTCTACCACCACCATGTTCTCATATGATAAAAACAGTAACAGTAACAATGTCTTTTCCATGGGAAGTAGCTATGAAAATGCAAGCTTTGATGAGAGGCATGGGAAAATGCTCAAGAGTAATAGCTCAAGCTCCATCATTTCTCATCATGTTGCAAACAACAATGCTTCTTCTTCTTCTTCAGCACCACCCTCATCATCCACCTTCATCTTGTCCTTTGAAAACTCAATCATGGAACCTTCTCATCACCACCATCATCATAAACCTAATAATGATCATGGTAGTTGCCCTAGGGATGCCCTATGTTCTTCACTTTTGAGCTCAAAGAATGACCATCTCAGCACACCAAAGGCCAAACAAGGTGCCAAGAAGTATAGAAGCTCATCTGAGATTCAAGATCACATCATGGCTGAGAGAAAAAGGAGACAGGAACTCACTGAAAGGTTCATAGCACTTTCTGCCACCATACCTGGATTGAAGAAGACAGACAAGGCCTATATACTAAGGGAAGCAATGATATACATGAAAGAACTTCAAGAGAGAGTGATTGAGCTAGAAAACCAGAACAAGAGGAAGAGAACTGCAGAATCAAGAATATTGATAAAGAAATATTCGCAAAGAGAAGAAGAAAGAAAGTGTGATAGATCAAGTCCTCCACTTCCTCAAGTTGAAGCAAGAGTGTTGGAAAAGGAGGTTCTCATTGGAATCCATTGCCACAAACAAAAGGACATTGTGCTCAAAATCATGGCTTTGCTCCAAAATCATCATCTTTCTCTTGCTAGCAGCAGTGTCTTGCCCTTTGGGACTTCCACTCTTAAAGTCACAATCATTGCCCAGATGGACGAACAATACTGCATGACAGTGAATAATCTTGTAAAAAGCCTGAGACAAGCTCTCTTGAAAATCACATGA 1047 0.404 MEDSWESWISSLKMVEDSSTDHSHINDDNFLTGILLEPLDFSFHNSSTTTMFSYDKNSNSNNVFSMGSSYENASFDERHGKMLKSNSSSSIISHHVANNNASSSSSAPPSSSTFILSFENSIMEPSHHHHHHKPNNDHGSCPRDALCSSLLSSKNDHLSTPKAKQGAKKYRSSSEIQDHIMAERKRRQELTERFIALSATIPGLKKTDKAYILREAMIYMKELQERVIELENQNKRKRTAESRILIKKYSQREEERKCDRSSPPLPQVEARVLEKEVLIGIHCHKQKDIVLKIMALLQNHHLSLASSSVLPFGTSTLKVTIIAQMDEQYCMTVNNLVKSLRQALLKIT* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0774 348 SMART finulus 180 229 IPR011598 GO:0046983
Vra9g0774 348 Pfam Helix-loop-helix DNA-binding domain 178 224 IPR011598 GO:0046983
Vra9g0774 348 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 174 223 IPR011598 GO:0046983
Vra9g0774 348 Coils Coil 213 240 - -
Vra9g0774 348 Gene3D - 165 239 IPR036638 GO:0046983
Vra9g0774 348 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 4 346 - -
Vra9g0774 348 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 179 238 IPR036638 GO:0046983
Vra9g0774 348 PANTHER BHLH TRANSCRIPTION FACTOR 4 346 - -
Vra9g0774 348 MobiDBLite consensus disorder prediction 153 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0774 Vra-Chr9 8935652 8939638 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0774 154 344 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 45.050 2.76e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra9g0774 HLH 6.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0774 - - vra:106773267 653.284