Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0771 ATGAAGTGCTTTCACTATTTCAGAGATAAATCTAGAAACGGTAGGCAAAGGTCAGCACCTGAACTGAAGGAGAAAGAGCAACTGGACTTTTCAGGGGCTGAGAGAGTCACCAAGTCTTCAAGCTCATCTGCTTCACCCCGTGGTATACCGGAACTGTATGAGGAGAAGGGTCAGAATTTGAGGGTCTTCTCCCTCTCAGAGCTCAAGCGTGCAACAAGTGATTTCAACAGGCTTTTTAAGATAGGAGAAGGTGGATTTGGAAGTGTGTTTAAAGGTTCAATCCAGCCTGCTGATGGGAATGGGAATCCTGTTGTAGTTGCTATCAAAAGGCTTAACAAGGATGCCTTACAGGGCCACAAGCAATGGTTGACTGAAGTTCAGTTTCTTGGTGTTGTGGAACACCCAAATCTTGTCAAGCTTATTGGATACTGTGCTTTGGACGACGAACGAGGCATCCAGAGACTACTCGTATATGAATACATGCCGAACAAAAGCTTAGAGTTTCATCTTTTCAATAAAGCTTATGATCCTCTTCCTTGGAAAACTAGACTTGAAATAGCACTTGGAGCAGCTCAAGGGTTAACTTATCTTCATGAACAACTAGAAATTCAGGTGATATATCGAGATTTTAAATCTTCAAATATATTACTGGATGGAGATTTTAAGCCAAAGCTTTCTGATTTTGGACTTGCCAGGGAAGGGCCAGTAGCTGGTGATACTCATGTTTCAACCGCTGTGATGGGGACGTATGGTTATGCTGCTCCAGATTACATTGAGACAGGTCATCTCACAGCCAAGAGTGATGTGTGGAGTTTTGGAGTGGTTTTATATGAAATGCTTACTGGCAGGCGTTCAATGGAAAGAAACAGGCCTAAATCAGAGAAGAAACTGCTGGAGTGGGTGAAGCAATACCCTTCTGACAGCAAGAAGTTTGACACAATAATTGATCAGCGACTTCAGGGAGAGTATTCCAAGAATGGAGCAAGAAAACTTGCAAAACTCGCCGATCATTGCCTGCGTAAGAGCGCGAAAGATCGGCCGACGATGAGTCAGGTGGTGGAGAGACTCAAGCAGATAATGGAAGACAGTGATGAGGCAGATGACAGAAGTGTTGAGGTATCAGAAAATGGTCAAGCTGAGGCTGAAGAGAAGGGAAATCAATTAAGGTCTTCAGAGCTGTGGAAAAAGAGGATGGAACATCTTGCAAAACTTGGTGAAAGTGTGGAGAGTGCTGGCAGAAAAAGATTTATGATCCTTCATAGAGCCAATGTGTCCTCATAG 1281 0.4364 MKCFHYFRDKSRNGRQRSAPELKEKEQLDFSGAERVTKSSSSSASPRGIPELYEEKGQNLRVFSLSELKRATSDFNRLFKIGEGGFGSVFKGSIQPADGNGNPVVVAIKRLNKDALQGHKQWLTEVQFLGVVEHPNLVKLIGYCALDDERGIQRLLVYEYMPNKSLEFHLFNKAYDPLPWKTRLEIALGAAQGLTYLHEQLEIQVIYRDFKSSNILLDGDFKPKLSDFGLAREGPVAGDTHVSTAVMGTYGYAAPDYIETGHLTAKSDVWSFGVVLYEMLTGRRSMERNRPKSEKKLLEWVKQYPSDSKKFDTIIDQRLQGEYSKNGARKLAKLADHCLRKSAKDRPTMSQVVERLKQIMEDSDEADDRSVEVSENGQAEAEEKGNQLRSSELWKKRMEHLAKLGESVESAGRKRFMILHRANVSS* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0771 426 CDD STKc_IRAK 81 359 - -
Vra9g0771 426 PIRSF ILK 12 50 - -
Vra9g0771 426 PIRSF ILK 55 372 - -
Vra9g0771 426 MobiDBLite consensus disorder prediction 33 47 - -
Vra9g0771 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Vra9g0771 426 PANTHER OS01G0588500 PROTEIN-RELATED 29 414 - -
Vra9g0771 426 MobiDBLite consensus disorder prediction 360 391 - -
Vra9g0771 426 PANTHER OS07G0495150 PROTEIN 29 414 - -
Vra9g0771 426 MobiDBLite consensus disorder prediction 8 32 - -
Vra9g0771 426 MobiDBLite consensus disorder prediction 8 50 - -
Vra9g0771 426 MobiDBLite consensus disorder prediction 360 379 - -
Vra9g0771 426 SUPERFAMILY Protein kinase-like (PK-like) 58 356 IPR011009 -
Vra9g0771 426 Gene3D Transferase(Phosphotransferase) domain 1 161 383 - -
Vra9g0771 426 ProSitePatterns Protein kinases ATP-binding region signature. 81 109 IPR017441 GO:0005524
Vra9g0771 426 Gene3D Phosphorylase Kinase; domain 1 50 160 - -
Vra9g0771 426 Pfam Protein tyrosine and serine/threonine kinase 80 356 IPR001245 GO:0004672|GO:0006468
Vra9g0771 426 ProSiteProfiles Protein kinase domain profile. 75 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0771 Vra-Chr9 8847311 8852280 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0771 61 356 Glycoside Hydrolase AT3G07070 48.993 1.80e-93 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vra9g0771 PK_Tyr_Ser-Thr 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0771 - - gmx:100784625 731.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0771 9 8847311 8852280 Vra9g0771 9 8847311 8852280 ECH