Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0770 ATGGATGAATCATGGGAAAAATGGTTTTCTGATTTGGAAATGGATGACGATAAGTTGCATCTCTTCAACGAACACGACGTGAACTCTCTTGAGGAAGAATTGATGAAAGGAGAGAGTTCAGTGCCTTATGATTCAGATTTTTCTATCAAAAACAACAACAACATGGAAAATATTTCATGTTTGGAAACGAACACGAATTCTAGTTCGGAGAAGAACCAAGAATTGTCATCCTCTTTCGAGGACTCCACTGTTGTGTCAAATGATGTTGATGAAGCATTCCATGCCGAGCAAAAGAAAAGAAGCACTCTTCAGACAGAACAGCACAAAATGTCTGAGACGAGAGACAAAATCAGAACTATGATGGAAATGGGTGATGATGAGTTTCATTTGTTCACTAATTCTCTTGAGGAAGAATTGATGAAGGTTGAGAGCACTTCAGGTTTTGATATCAACAACAAGAAGAAGAACAACATAGACGGTGGTTCATGTTTGAAAACGAACACACAACATGCGAATTCTGGTTTGGAGAAACATATATGTTCATGCACTCTGGCTTTTGAGGACTCCACTGTGGTTTCAAATGTTTCTGATGAAGCATTACATGCAAAGCCTGAAAAGAAAAGAAGCACTTTTCATCAGACGAATCAGCACATAATGGCTGAGAGGAAGAGGAGAGAGAAAATCAGCACTATGATGGTAGAACTTTCAGCCATGCTTCCTGGTTTGAAAAAGTTAGACAAGATATCTATCCTTGGCAAAACGATCGATTATGTAAAACATTTACAGAATCGTGTGAAAGATTTACAAGAACAAAAACGTAAAGATGTAAGAATCAGAGTTATTTGTGACAGACGACAACACATTGTAGCAAAGCTATTTTCGAAGCTTGAATCTCACCATCTCTCCATAGTTGGTAGCAGTGTTTTGCCATTGGGAAGTTCTGCTCTAAACATTTGTATCATTTGCCAGGTGGAACATTTCAGCATGGCAATAGATGACTTAGTGAATATTTTAAATGAGGAT 1023 0.3793 MDESWEKWFSDLEMDDDKLHLFNEHDVNSLEEELMKGESSVPYDSDFSIKNNNNMENISCLETNTNSSSEKNQELSSSFEDSTVVSNDVDEAFHAEQKKRSTLQTEQHKMSETRDKIRTMMEMGDDEFHLFTNSLEEELMKVESTSGFDINNKKKNNIDGGSCLKTNTQHANSGLEKHICSCTLAFEDSTVVSNVSDEALHAKPEKKRSTFHQTNQHIMAERKRREKISTMMVELSAMLPGLKKLDKISILGKTIDYVKHLQNRVKDLQEQKRKDVRIRVICDRRQHIVAKLFSKLESHHLSIVGSSVLPLGSSALNICIICQVEHFSMAIDDLVNILNED 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0770 341 Coils Coil 258 278 - -
Vra9g0770 341 PANTHER BHLH TRANSCRIPTION FACTOR 82 275 - -
Vra9g0770 341 PANTHER BHLH TRANSCRIPTION FACTOR 274 340 - -
Vra9g0770 341 Gene3D - 211 280 IPR036638 GO:0046983
Vra9g0770 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 215 273 IPR036638 GO:0046983
Vra9g0770 341 Pfam Helix-loop-helix DNA-binding domain 215 262 IPR011598 GO:0046983
Vra9g0770 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 212 261 IPR011598 GO:0046983
Vra9g0770 341 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 82 275 - -
Vra9g0770 341 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 274 340 - -
Vra9g0770 341 SMART finulus 218 267 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0770 Vra-Chr9 8828780 8834368 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0770 158 338 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 29.297 1.23e-21 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra9g0770 HLH 3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0770 - - vra:106773264 664.84