Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0768 ATGAATGATGATGAGTTGCATCTGTTCAACGAACACGACGTGAACTCTCTTGAGGAAGAATTGATGAAAGGAGAGAGTACTTCAGGTTTTGATATCAACAACAAGAAGAAGAACAACATAGACGGTGGTTCATGTTTGAAAACGAACACACAACATGCGAATTCTGGTTCGGAGAAACATATATGTTCATCATGCACTCTGGCTTTTGAGGACTCCACTGTGGTTTCAAATGTTGCTGATGAAGCATTACATGCAAAGCCTGAAAAGAAAAGAAGCACTTTTCATCAGATGAATCAGCACATAATGGCTGAGAGGAAGAGGAGAGAGAAAATCAGCACTATGATGGAAGAACTTTCAGCCATGCTTCCTGGTTTGGAAAAGTTAGACAAGATATCTATCCTTGGCAAAACGATCGATTATGTGAAACATTTACAGAATCGTGTGAATGATTTACAAGAACAAAAACGTAAGACAGAATCTAAGTGCAGCAAAAACAACGGATCCAATGTTAATATTTCAGAAAATTTTCCCAAAGTTGATGCAAGTGTTTCAGGTAAAGATGTAAGAATCAGAGTTATTTGTGACAGACGGCAACACATTGTAGCAAAGCTATTTTCGAAGCTTGAATCTCACCATCTCTCCATAGTTCGTAGCAGTGTTCTGCCATTGGGAAGTTCTGCTCTAAACATTTCTATCATTTGCCAGGTGGAACATTTCAGCATGGCAATAGACGACTTGGTGAATAATTTAAATGAGGATTTATTGAAATTATATAACTTGCAACATTAA 789 0.3764 MNDDELHLFNEHDVNSLEEELMKGESTSGFDINNKKKNNIDGGSCLKTNTQHANSGSEKHICSSCTLAFEDSTVVSNVADEALHAKPEKKRSTFHQMNQHIMAERKRREKISTMMEELSAMLPGLEKLDKISILGKTIDYVKHLQNRVNDLQEQKRKTESKCSKNNGSNVNISENFPKVDASVSGKDVRIRVICDRRQHIVAKLFSKLESHHLSIVRSSVLPLGSSALNISIICQVEHFSMAIDDLVNNLNEDLLKLYNLQH* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0768 262 Gene3D - 95 168 IPR036638 GO:0046983
Vra9g0768 262 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 59 260 - -
Vra9g0768 262 Pfam Helix-loop-helix DNA-binding domain 99 145 IPR011598 GO:0046983
Vra9g0768 262 PANTHER BHLH TRANSCRIPTION FACTOR 59 260 - -
Vra9g0768 262 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 99 160 IPR036638 GO:0046983
Vra9g0768 262 SMART finulus 101 150 IPR011598 GO:0046983
Vra9g0768 262 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 95 144 IPR011598 GO:0046983
Vra9g0768 262 Coils Coil 141 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0768 Vra-Chr9 8805214 8807024 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0768 100 254 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 39.306 1.70e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra9g0768 HLH 1.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0768 - - vra:106773264 361.688