Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0767 ATGGACCAAATGGATGACGAGTCATGGCAAAAATGGGTTTCAATTTTGGAGGAAAATGATTGCCATACTTTAACTGAAGAATTTAAGAGGGACAGTTCTGTGGTGCCTGCAGAAGACTCATTGAAAGAAAGCAGTTTGAGAATTTCATCTTTGGAAAAGAACACTGGCTTTTACATGACAAGTCTCACACAACAACATGCTTCTTCACAAAAACCAAAGTCTTGTGTTCTGTCGTTTGAGAATTTCACTTCAGTGCCAATTTTTGATAAGAAAACATGCCAACATCTTGGTGAACACTCAAATCAGACTGAAGAAAAAACCAGAAAACCCCTCAAGAGGGAAAGAAACTCTTCTCAGACACTTGATCACATAATGGCTGAGAGAAAAAGGAGAGAGAATCTCACCAAAATGTTCATTGCCCTTTCTTCTCTTATTCCTGGCTTGAAAAAGATGGACAAGGTTACTGTTCTGAACAAGGCGATAGAATACGTGAAGTGTCTGGAGCAGCGTGTGAATGATTTGGAGAAAGAGAATAAGAAGAGGAAGATAGAATCATCAGAAGGATGTTTGAAAGTGAGAAAAAGCAAGATGGTTGGTTATGAGTTTTCATGGAGCTCTGATGCTTGTTATGATGATCACAAAGCTACCAATAAATGTTCAAAGGTTGAAGCAAGAGTTGCAGGAAAAGATGTACTTATCAGAGTAACCTGTGAGATGCAAAGGAACGTTCTGCAGAATGTTATGGCCAAGCTTGAAGCTCATAATCTCTCTCTTGTTTCCACCAATGTTTTGCCTTTTGGGAATTCTGCTCTCACCATTACCACCATTGCTCAGATGAACCCTAAATTCACCACCACAGTTGACAACTTTGTGAAAACGTTGACTGAGGATTTGTCCAAAGTGCTGTAA 909 0.3938 MDQMDDESWQKWVSILEENDCHTLTEEFKRDSSVVPAEDSLKESSLRISSLEKNTGFYMTSLTQQHASSQKPKSCVLSFENFTSVPIFDKKTCQHLGEHSNQTEEKTRKPLKRERNSSQTLDHIMAERKRRENLTKMFIALSSLIPGLKKMDKVTVLNKAIEYVKCLEQRVNDLEKENKKRKIESSEGCLKVRKSKMVGYEFSWSSDACYDDHKATNKCSKVEARVAGKDVLIRVTCEMQRNVLQNVMAKLEAHNLSLVSTNVLPFGNSALTITTIAQMNPKFTTTVDNFVKTLTEDLSKVL* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0767 302 Gene3D - 114 188 IPR036638 GO:0046983
Vra9g0767 302 Coils Coil 157 184 - -
Vra9g0767 302 MobiDBLite consensus disorder prediction 96 122 - -
Vra9g0767 302 Pfam Helix-loop-helix DNA-binding domain 123 168 IPR011598 GO:0046983
Vra9g0767 302 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 118 167 IPR011598 GO:0046983
Vra9g0767 302 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 118 183 IPR036638 GO:0046983
Vra9g0767 302 PANTHER BHLH TRANSCRIPTION FACTOR 15 300 - -
Vra9g0767 302 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 15 300 - -
Vra9g0767 302 SMART finulus 124 173 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0767 Vra-Chr9 8789593 8791453 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0767 64 302 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 36.863 2.95e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra9g0767 HLH 7.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0767 - - vun:114166535 414.075