Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0765 ATGCAGCTTACACACCTGTGCCTTGTCATGCCCTCAGACTATGATAAACTAGAGCCACTTCATGCAACCCCACCAAAACAGAAAAAAGTTAAGGCCAAAAAGGACTTCCAAGGGGCATGTGGAGGCCATGTTGTTGCTACCCTTCAAGGTTCCTTAACAAGGTTGTGTGAATCAAAGTGGTGGAGTCTATGCCAAGATGGTGCAAGAGAAAGCAAGCAGATCAAGGCCTCGTCTTGTGTGTTTCATGATATGGAGGGTGTGCAACTCTCTTCAAAGATTGGAAGGGACAGCAACAATCCAAGGATTTTCAGCTATGCTGAGCTGTACATAGGGTCAAGGGGTTTTTCTGAGGAGGAGGTTCTGGGAAGTGGAGGTTTTGGCAAAGTGTACAAAGCTGTCATGCCTAGTGATGGAACAGTGGTGGCTGTGAAGTGTTGCTTGGCAGGGAAAGGTGGCCAGTTTGAGAAGACTTTTGCTGCAGAACTAGCAGCAGTGGCACACCTTCGCCACAAGAACCTTGTTCCCTTGAGGGGTTGGTGTGTTTTTGAGGATCAACTTTACCTTGTGTATGACTACATGCCTAATCTCAGCCTTGACCGGGTGCTGTTTCGGAAGAACTTGAAGGAGGAGCCACTTGGGTGGGTGAGGCGTGGGAAAATTGTGAAGGGTTTGGCATGTGCGTTGCACTATCTGCATGAACAGTTGGAGACTCAGATCATTCACAGGGATGTGAAGACCAGCAATGTGATGCTTGATTCCCATTACAACGCTAGGTTGGGGGACTTTGGCTTGGCAAGGTGGCTTGAGCATGAGCTTGAGTACGAGTATGAGACTAGGAAAGAAGCATCAACATCAAGCAAGTTTGAGCATTTCAGGTTGAGTGAGACCACAAGGATTGGTGGCACAATTGGGTACTTGCCCCCTGAGAGCTTCCAGAGAAGGAGTGTTGCAACCTCAAAATCTGATGTTTTCAGCTTTGGAATCGTTGTGTTGGAGGTGGTGTCTGGAAGGAGAGCCATTGATCTCACGTACCCTGATGAGAAAATCATCTTGGTTGATTGGATCAGAAGACTCAGTGATGAAGGGAGACTCGTTGATGCTGGGGATACAAGGCTGATATACGGTTCCTACAAGGCTTTTGAGATGGAGCATTTGATTCACATAGGCCTCTTGTGCACACTCCATGATCCTGTGTTGAGACCAAGCATGAAGTGGATTGTAGAAGCACTTTCTGATATGTCAAATAAGTTGCCAACACTCCCTTCGTTTCACTCCCATCCTATGTACATCTCTTTGTCTTCTTCATCTGAGACTAGTCCAAGCAGCTCAAAAGGGACTGGCTCTAGCACAGGTACAGAAAGTTCTAGCAATCATTCTAGTTCCATTTCAAAATATGTCACTGCCACAGGAGATACCATATATGTAACAGCTGAAGCTGAACAGAGAAACGGTGGAACTAACTCTTGTAAGAGTAGCAAGAGAACGATGCATAAGCAGGCTTCATTTTCTGTGGTTCAAACACCTAGGGAGATACCATTCAAGGAGATTGTTTCAGCCACAGAGAACTTCTCAGAGTCCAAAAGGGTGGCCGAGTTAGACTTTGGAACTGCTTACCATTGCATCCTAGATGGCCACTGCCATGTCATGGTGAAACGCCTTGGCTTGAAGACATGCCCTGCACTGCGCCAAAGATTTTCCAATGAGCTAAGAAACCTTGCAAAACTTCGCCACAGGAACTTGGTGCAGCTCAGAGGGTGGTGCACTGAGCAAGGAGAGATGCTTGTGGTGTATGATTACTCAGCTAGAAGATTTCTCAGCCACCAACTTCACCATCATGTCAATGGTACTAAAAAGGGTTATTCTGTTCTGAAATGGCATCATAGGTACAACATAGCGAAATCACTTGCATCTGCACTTCTCTATCTGCATGAGGAATGGGATGAACAGGTCATTCACAGGAACATAACCTCTTCAGCAGTGACTCTTGAACCTGACATGACCCCAAGACTAGGTAGTTTTGCTCTGGCTGAGTTTCTTTCAAGGAATGAGCATGGCCATCATGTGATCACCACCAGAAACAAGTCTGTTTGTGGGATTTACGGCTACATGTCACCAGAATATGTAGAATCAGGAGAAGCAACAGTGGCTGCTGATGTTTATAGTTTTGGTGTGGTGGTGCTTGAGATTGTGAGTGGACTTAAAGCTGTGGATTTTAGGCAACCTGAGGTGCTTTTGGTGAAGAAGGTTCATGAATTTGAGATGAGAAAAAGATCACTTGAGGCTCTAGCAGATACAAGACTAAATGGAGAATACAATCACAAGGAGCTAATGAGATTGGTGAGGTTAGGAGTTGCATGCACCCGTTCTGACCCAAAACTAAGACCAAGCACAAGACAGATAGTTAGCATCCTTGATGGAAATGAGAAATTAATCATGGCGGAGAACATGGAGAGCAGGGAAGATTGGAGAGAAAGAAACGCTTGCTCTTTGTCTCTGGTCAAGAGAATCCAAGCTCTAGGAATACAATGA 2529 0.4571 MQLTHLCLVMPSDYDKLEPLHATPPKQKKVKAKKDFQGACGGHVVATLQGSLTRLCESKWWSLCQDGARESKQIKASSCVFHDMEGVQLSSKIGRDSNNPRIFSYAELYIGSRGFSEEEVLGSGGFGKVYKAVMPSDGTVVAVKCCLAGKGGQFEKTFAAELAAVAHLRHKNLVPLRGWCVFEDQLYLVYDYMPNLSLDRVLFRKNLKEEPLGWVRRGKIVKGLACALHYLHEQLETQIIHRDVKTSNVMLDSHYNARLGDFGLARWLEHELEYEYETRKEASTSSKFEHFRLSETTRIGGTIGYLPPESFQRRSVATSKSDVFSFGIVVLEVVSGRRAIDLTYPDEKIILVDWIRRLSDEGRLVDAGDTRLIYGSYKAFEMEHLIHIGLLCTLHDPVLRPSMKWIVEALSDMSNKLPTLPSFHSHPMYISLSSSSETSPSSSKGTGSSTGTESSSNHSSSISKYVTATGDTIYVTAEAEQRNGGTNSCKSSKRTMHKQASFSVVQTPREIPFKEIVSATENFSESKRVAELDFGTAYHCILDGHCHVMVKRLGLKTCPALRQRFSNELRNLAKLRHRNLVQLRGWCTEQGEMLVVYDYSARRFLSHQLHHHVNGTKKGYSVLKWHHRYNIAKSLASALLYLHEEWDEQVIHRNITSSAVTLEPDMTPRLGSFALAEFLSRNEHGHHVITTRNKSVCGIYGYMSPEYVESGEATVAADVYSFGVVVLEIVSGLKAVDFRQPEVLLVKKVHEFEMRKRSLEALADTRLNGEYNHKELMRLVRLGVACTRSDPKLRPSTRQIVSILDGNEKLIMAENMESREDWRERNACSLSLVKRIQALGIQ* 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0765 842 Gene3D Transferase(Phosphotransferase) domain 1 193 418 - -
Vra9g0765 842 SUPERFAMILY Protein kinase-like (PK-like) 98 440 IPR011009 -
Vra9g0765 842 Gene3D Phosphorylase Kinase; domain 1 87 192 - -
Vra9g0765 842 SUPERFAMILY Protein kinase-like (PK-like) 497 804 IPR011009 -
Vra9g0765 842 Pfam Protein tyrosine and serine/threonine kinase 527 804 IPR001245 GO:0004672|GO:0006468
Vra9g0765 842 PANTHER - 1 841 - -
Vra9g0765 842 Pfam Protein kinase domain 116 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0765 842 ProSiteProfiles Protein kinase domain profile. 115 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0765 842 Gene3D Transferase(Phosphotransferase) domain 1 605 828 - -
Vra9g0765 842 ProSitePatterns Protein kinases ATP-binding region signature. 121 150 IPR017441 GO:0005524
Vra9g0765 842 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Vra9g0765 842 Gene3D Phosphorylase Kinase; domain 1 484 599 - -
Vra9g0765 842 ProSiteProfiles Protein kinase domain profile. 523 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0765 842 MobiDBLite consensus disorder prediction 434 461 - -
Vra9g0765 842 SMART serkin_6 115 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0765 842 PANTHER RECEPTOR LIKE PROTEIN KINASE S.2 1 841 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0765 Vra-Chr9 8771424 8774257 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0765 507 810 Receptor kinase-like Gene Family AT5G59270 36.721 4.50e-54 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vra9g0765 PK_Tyr_Ser-Thr 1.8e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0765 - - gmx:100781955 1455.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0765 9 8771424 8774257 Vra4g0051 4 1645886 1648264 PCT