Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0756 ATGCCTCCTAAAGCGACGAAGCGTGGGTCCGCGTCAAGCGCCTCAAAGAGGGGTGGCAGAGGGGGCAGGGGAATCTCCAAGGGTGCGCAGAGCCAGCAGCACCATGAACCTGCGGAAGAGGTAGTGAAGGTCGAGGAGAAGCAACCCATTGTTGTTGCTGAGGAGGAACAACCCAAGGCGATGGAAGAAGAGCACCCTTTGGTTGAAGAGAAACAGCTTGTGGTTGAAGAGAAGGAATCTGTTGTGGTGGTTGAGGATAAGGCTATTGATATGAACCAAATGGCTCCGGAGGCTGTGGAAGAAGCGTCCCATCTTGCTAATGGATTGACCGCCTTGAAAAACAATGAAGAGGATGTTAAGGAATCCATAGATGAATATGAGAAAGACGAACGCTTAGATTTGGAGGATAATGATCCTGAGTATGAAGCTGAGGAGTATGGTGGAGTTGATTATGATGAGAAGGAAATTGAACAAGATGAGGGTCATGAGGTGGGCAATGAAGTAGAGGAAGAAGAGGCTGAGGATAATTTAGGAGAAGAAGAGGGTGATACAGGTGAGGAAGAGGTTGAAGATGTTCATGACGAACTTGAGGGTGAGGAGGAGCATGAGCATACTGGTGAGGAGCATGAGCACCCTGATTTTGCTGATGTGGATGAGGAGGAACATCGGGAAGTTGTGAAAGAGAGGCGGAAGCGGAAAGAGTTTGAAGTTTTTGTTGGTGGCTTGGACAAGGATGCTACTGAGAGTGATCTGAGGAAGGTATTTGGTGAAGTTGGGGTTGTTACAGAGGTCAGGTTGATGATGAATCCTCAGACTAAAAAGAACAAGGGATTTGCATTCTTGCGTTTTGAAACTGTGGAACAAGCTAAACGAGCTGTGTCAGAGCTCAGAAATCCTGTGATTAATGGCAAACAATGTGGTGTTACTCCTAGTCAGGACAGTGATACACTCTATTTGGGGAATATATGCAAGACATGGACAAAGGAAGCTTTAAAAGAGAAGCTGAAACATTATGGAGTTACAAATGTTGAGGATTTGACCTTGGTAGAAGATACTAATGATGAAGGAAAGAACCGTGGGTTTGCATTTTTAGAATTTTCCTCTCGTTCTGATGCTATGGATGGCTTTAAGCGACTGCAGAAGAGGGATGTAGTGTTTGGAGTTGATAAGCCTGCAAAAGTTTCTTTTGCAGATTCTTTTATTGACCCGGGTGATGAAATTATGGCACAGGTTAAAACTGTGTTTATTGATGCATTACCTCCTTCATGGGATGAAGATTATGTTCGTGATCTTCTCAAGAAATATGGAGAGATTGAAAAGATTGAGCTAGCCAGGAACATGCCAGCTGCACGTAGGAAGGATTATGGGTTTGTTACATTTGGCACACACGACGCTGCTGTAAAATGTGCTGATAGTATTACTGGCACAGAGTTGGGTGAAGGAGACAAGAAGGCAAAAGTTAGAGCAAGGTTGTCAAGACCACTTCAGAGAGGTCGTGGAAAACACATTAGTCGTGGTGACTATCGTTCTGGTCGAGGATCTGGAATGATGACAAGGCCTTCATGGAGCCGACCTTCTCCTCGTACTTTTACTCGTGGTGCAAGAGGAGTTGGAAGTCGAGCTCCACCTGCCAGACCAGTTAGTGTGAGAGATAGACGCCCTATCATGTCCATACCTGCAAGAAGTAGACCAGTGCCTCCTCCATCTAGATCTTATGATAGGAGACCAGTTGCACCTGCATATCCAAAAAGTAGCATGAAGAGAGATTATAGTCGGCGAGAGGATATACCACCTCCAAGAAGTAGAGTTCCTGTAGATTATGGCTCAAGGGTGGCTTCTGAAAGAAGGCCATCTTACAGGGATTATCCTGCCCGTGGTCCTGGTCCTGGCTACTCTGAGCTCCCTAGAAGCACGTCTCGGGCTGCACCGAGGAGGGGCTATGTGGATGAGGGATATAGCCAAAGATTTGAGAGGCCTCCACCTCCACCTCCTCCCCATATAAGCTACCGTGAAGGACGTCCCCGAGATTATGATACTCTGTCTGGCTCAAAACGTTCTTATGCTGCTATAGATGATGTTCCTCCTCGATATGCTGATACTGGTGCTCGCCAATCAAGAGCTCGATTGGACTATGACTATGGTGGTAGTGCTTCACAGTATGGAGATGCTTATGGTGATAGACTTGGAAGATCCAGTATGGGATATGGTGGTAGCAGCAGAAGCTCTATGTCTAGTCAAGATTCACATGGGATGTATAGTAGTCGACAGGGCATGAGTTATGGAGGTTCTTTTACTGGTGGTGATGTTGGTGGCTTGTACTCATCAAGTTATGGCAGTGATTACATTTCCCGTGGAAGTGATGTTGGTGGCAGCTCATATTCTTCAGTGTATTCAAGCAGGGGCGTGGGTGGTGGAAGCAGTTATATGGGTGGTGGAGGATCGGGCTCTTATTATTGA 2457 0.464 MPPKATKRGSASSASKRGGRGGRGISKGAQSQQHHEPAEEVVKVEEKQPIVVAEEEQPKAMEEEHPLVEEKQLVVEEKESVVVVEDKAIDMNQMAPEAVEEASHLANGLTALKNNEEDVKESIDEYEKDERLDLEDNDPEYEAEEYGGVDYDEKEIEQDEGHEVGNEVEEEEAEDNLGEEEGDTGEEEVEDVHDELEGEEEHEHTGEEHEHPDFADVDEEEHREVVKERRKRKEFEVFVGGLDKDATESDLRKVFGEVGVVTEVRLMMNPQTKKNKGFAFLRFETVEQAKRAVSELRNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDLTLVEDTNDEGKNRGFAFLEFSSRSDAMDGFKRLQKRDVVFGVDKPAKVSFADSFIDPGDEIMAQVKTVFIDALPPSWDEDYVRDLLKKYGEIEKIELARNMPAARRKDYGFVTFGTHDAAVKCADSITGTELGEGDKKAKVRARLSRPLQRGRGKHISRGDYRSGRGSGMMTRPSWSRPSPRTFTRGARGVGSRAPPARPVSVRDRRPIMSIPARSRPVPPPSRSYDRRPVAPAYPKSSMKRDYSRREDIPPPRSRVPVDYGSRVASERRPSYRDYPARGPGPGYSELPRSTSRAAPRRGYVDEGYSQRFERPPPPPPPHISYREGRPRDYDTLSGSKRSYAAIDDVPPRYADTGARQSRARLDYDYGGSASQYGDAYGDRLGRSSMGYGGSSRSSMSSQDSHGMYSSRQGMSYGGSFTGGDVGGLYSSSYGSDYISRGSDVGGSSYSSVYSSRGVGGGSSYMGGGGSGSYY* 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0756 818 PANTHER RNA RECOGNITION MOTIF 1 818 - -
Vra9g0756 818 MobiDBLite consensus disorder prediction 1 48 - -
Vra9g0756 818 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 818 - -
Vra9g0756 818 MobiDBLite consensus disorder prediction 734 754 - -
Vra9g0756 818 SMART rrm1_1 316 395 IPR000504 GO:0003723
Vra9g0756 818 SMART rrm1_1 413 488 IPR000504 GO:0003723
Vra9g0756 818 SMART rrm1_1 236 309 IPR000504 GO:0003723
Vra9g0756 818 CDD RRM_SF 414 488 - -
Vra9g0756 818 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 315 399 IPR000504 GO:0003723
Vra9g0756 818 Coils Coil 109 132 - -
Vra9g0756 818 SUPERFAMILY RNA-binding domain, RBD 236 379 IPR035979 GO:0003676
Vra9g0756 818 MobiDBLite consensus disorder prediction 785 818 - -
Vra9g0756 818 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 235 313 IPR000504 GO:0003723
Vra9g0756 818 MobiDBLite consensus disorder prediction 110 223 - -
Vra9g0756 818 Gene3D - 402 520 IPR012677 -
Vra9g0756 818 CDD RRM_SF 317 372 - -
Vra9g0756 818 MobiDBLite consensus disorder prediction 33 48 - -
Vra9g0756 818 Gene3D - 150 314 IPR012677 -
Vra9g0756 818 MobiDBLite consensus disorder prediction 785 802 - -
Vra9g0756 818 SUPERFAMILY RNA-binding domain, RBD 407 515 IPR035979 GO:0003676
Vra9g0756 818 MobiDBLite consensus disorder prediction 731 754 - -
Vra9g0756 818 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 412 494 IPR000504 GO:0003723
Vra9g0756 818 MobiDBLite consensus disorder prediction 494 681 - -
Vra9g0756 818 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 414 479 IPR000504 GO:0003723
Vra9g0756 818 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 237 305 IPR000504 GO:0003723
Vra9g0756 818 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 317 382 IPR000504 GO:0003723
Vra9g0756 818 MobiDBLite consensus disorder prediction 586 600 - -
Vra9g0756 818 MobiDBLite consensus disorder prediction 198 223 - -
Vra9g0756 818 MobiDBLite consensus disorder prediction 128 197 - -
Vra9g0756 818 Gene3D - 315 398 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0756 Vra-Chr9 8673161 8678790 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0756 230 493 Eukaryotic Initiation Factors Gene Family AT1G49760 23.411 4.24e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0756 - - gmx:100779340 1149.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0756 9 8673161 8678790 Vra9g0756 9 8673161 8678790 ECH
Vra9g0756 9 8673161 8678790 Vra4g0931 4 16360657 16366146 PCT