Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0739 ATGGATGATATATATATTATTAGTTCGTCAGATGATGATGAGTTGGAGGAGATAGATGTTCAAAACAGAACTCTTCCAACAACTACTGAAAGAAGTTCAGATTATGGTAGGCGGGATAATTCTTCAACAGGGGCTAATAGTTCAAACCTAAGTTCTTCTAGTTTGTATAATCATTCACAAATCAAACCTCTTACACTACCTGTGTCCAGTACCAATGCACTAAACCACAGAATTGCACGAAGAGATGAACCTTCATATCATGCTCAGAATGGAAACACAAGTCTGCAACAACCAGTTAATTCCCGAATTTCAAAGTCTCACGGTGCAGATTATGAGAAAATGTCATCTCAGCAAGCTTTTAAGAGGACCCTTCCTTCAACTCTTCAGCCTTCTGTAACAAGGGCTCTTCCTTCTCCTTTATTTGCGTCAGACATCCGATTAAGCAACCTAAAAGATAGCACAGACAATAGTCATCTTCATGATACATATAAGAATCGCCGCCAGGGAATAGGACCTAGCATATCCGGTGATAGGGCCTACATTCGTGATAGTGTTTTCAGGGGCTATGACGAAGGTCATTTACTGTATCAAAATGGTGGGAGCAGGATTCTTCCACCATCTTTGGTGCTTGGAAAGGCCATAACTCCACACTTTGCAATTTCTAGTGAATCTGCATATCGTTCTGGAATAGGTGATGAAAGGTCTGCCGAAAATGACGAGAGACTTATTTATGAGGCAGCATTACAGGATATCAGTCAACCTAAAACAGAGCATGACTTACCTGCTGGTGTATTGTCTGTCTCTCTTCTGAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAGGGAAACCAAGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAGGGTCTTGGAAAGACAGTATCAATGATTTCCCTCATTCTGGCATTGAGGTCATTACAGTCAAAATCAAAAACAGATGATGTGTTCAATCATAAAACTGAAGCTTTGAATTTGGATGATGATGATGACAATGGTGGTATAGATGTGGAAAAGCATAAAAATAGTGTGGAAGCTGATGAGTTGTTTCCTAGTAGAGAACCTAGCAGTTCAACACAGGCACCTGGTAGAAAAAGGCCAGCTGCTGGTACCCTAGTTGTCTGCCCTGCCAGTGTTATGCGACAGTGGGCCAGGGAACTTGATGAAAAAGTTGGAGATGAAAAGCTTTCTGTTTTAGTTTATCATGGGGGCAGTAGGACTAAGAATCATGTTGAACTTGCAAAATTTGATGTGGTTCTAACAACATACTCTATTGTGACTAATGAAGTTCCTAAGCAACCATTAGTTGAGGATGATGATATCGAGGACAAAAGTGGGGAAAGATTTGGGTTATCTTCTGAGTTTAATGTTAAAAAAAGGAAAAAACCATTTAACGGAAATAAGAAGGGTAAAAAAGGTAGAAAAGGAATTGATAGTTCTACGGAATGTGGTTCTGGTCCTCTTGCAAAAGTAGGTTGGTTTAGGGTTATTCTAGATGAGGCTCAAACGATAAAAAATCACAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTTAGAGCCAAAAGAAGGTGGTGCTTATCTGGAACGCCTATTCAAAATACTATTGATGATTTGTATAGCTACTTTAGATTCCTGAAGTATGATCCTTATGCTGTATATAAATCATTCTACAACACCATAAAGGTTCCTATATCCCGAAATTCTGGTCAAGGTTACAAGAAACTTCAAGCAGTTTTAAGGGCCATAATGCTACGTCGAACAAAAGGAACTTTGCTTGATGGGAAGCCAATAATCAATTTGCCTCCTAAAACAATTGAGCTCAGTAAAGTGGATTTCTCCGTTGAGGAGCGAGCCTTCTATACTAAGTTGGAATCAGACTCACGCACTCGATTTAGTGCATATGCTGCTGCTGGGACAGTCAATCAAAACTATGCTAATATTCTTTTAATGCTCTTACGTCTCCGACAGGCTTGTGATCATCCACGTCTTGTTAAAGATATTGATTCTGATCCTGTTGGGAAGGATTCTGTTGAAATGGCAAAAACTCTTCCAAGGGAATTGCTGATTAATCTGTTTGATTGTTTGGATGCAACCTTTACTATCTGTCATGTTTGCCATGATCACCCTGATCGCCCTGTTATTACAATGTGTGGCCATGTCTTCTGTTATGAATGTGTACAGGAATATTTGTCTGGTGATGATAATACTTGCCCTGCTGTTAATTGTAAAGAAACAATCGGTGATGATCTTGTTTTCTCCAAAGTTACTTTGAAGAGTTGTATCTCTGATGAGGGAGGCACTTCTAGTTCTTCAAATTCACATCTTAGCGATTATTCGCAAGTGCAGCGGGATGATTACATTTCATCTAAAATCAAAGCTGTTCTTGAGGTTTTGCAGTCAAATTGTAACGTGAAAATATCTAATTCTGACTTACCGAACTCTGGATGTTGTAGAGATTCGCCGTCCTCTGTTGATCTAGATGTTGATGACAGTGATTCAGAGGCTAGGGTTGCAAAACACACGAGAAAGTATTCAGGGTCCACAACTGAAGGATCGATAAAGGCTATAGTTTTTTCCCAGTGGACTAGCATGTTGGATTTAGTTGAGACATCATTGTGTCAATATGGTATAGTGTACAGGAGACTTGATGGCAGGATGACTCTGGGTGCAAGGGACAAAGCTGTTAGGGATTTCAATACTGAACCTGAGATAACTGTTATGCTGATGTCACTAAAGGCGGGAAATCTTGGTTTGAATATGGTTGCTGCTTGTCATGTTATTCTTTTGGATCTTTGGTGGAATCCAACTACTGAAGATCAAGCTATTGATCGAGCCCATAGAATTGGACAAACTCGTCCTGTTACTGTGACAAGGATTACTATAAAAGATACCGTTGAAGATCGGATACTGTCTCTTCAGAGAGCAGAGAGCCTATTGATGGTTTGGTGGTGGTGGCTCCCCTTCCCTCATCATTCAATTGCTCTATCACTGGGGAATCTGTATATGTGA 3039 0.4034 MDDIYIISSSDDDELEEIDVQNRTLPTTTERSSDYGRRDNSSTGANSSNLSSSSLYNHSQIKPLTLPVSSTNALNHRIARRDEPSYHAQNGNTSLQQPVNSRISKSHGADYEKMSSQQAFKRTLPSTLQPSVTRALPSPLFASDIRLSNLKDSTDNSHLHDTYKNRRQGIGPSISGDRAYIRDSVFRGYDEGHLLYQNGGSRILPPSLVLGKAITPHFAISSESAYRSGIGDERSAENDERLIYEAALQDISQPKTEHDLPAGVLSVSLLRHQKIALAWMLQRETKSLHCLGGILADDQGLGKTVSMISLILALRSLQSKSKTDDVFNHKTEALNLDDDDDNGGIDVEKHKNSVEADELFPSREPSSSTQAPGRKRPAAGTLVVCPASVMRQWARELDEKVGDEKLSVLVYHGGSRTKNHVELAKFDVVLTTYSIVTNEVPKQPLVEDDDIEDKSGERFGLSSEFNVKKRKKPFNGNKKGKKGRKGIDSSTECGSGPLAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISRNSGQGYKKLQAVLRAIMLRRTKGTLLDGKPIINLPPKTIELSKVDFSVEERAFYTKLESDSRTRFSAYAAAGTVNQNYANILLMLLRLRQACDHPRLVKDIDSDPVGKDSVEMAKTLPRELLINLFDCLDATFTICHVCHDHPDRPVITMCGHVFCYECVQEYLSGDDNTCPAVNCKETIGDDLVFSKVTLKSCISDEGGTSSSSNSHLSDYSQVQRDDYISSKIKAVLEVLQSNCNVKISNSDLPNSGCCRDSPSSVDLDVDDSDSEARVAKHTRKYSGSTTEGSIKAIVFSQWTSMLDLVETSLCQYGIVYRRLDGRMTLGARDKAVRDFNTEPEITVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILSLQRAESLLMVWWWWLPFPHHSIALSLGNLYM* 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0739 1012 MobiDBLite consensus disorder prediction 86 118 - -
Vra9g0739 1012 Gene3D - 485 609 IPR038718 -
Vra9g0739 1012 Gene3D - 242 330 IPR038718 -
Vra9g0739 1012 SUPERFAMILY RING/U-box 710 770 - -
Vra9g0739 1012 Pfam Zinc finger, C3HC4 type (RING finger) 711 756 - -
Vra9g0739 1012 CDD DEXDc_SHPRH-like 269 596 - -
Vra9g0739 1012 MobiDBLite consensus disorder prediction 38 55 - -
Vra9g0739 1012 ProSitePatterns Zinc finger RING-type signature. 727 736 IPR017907 -
Vra9g0739 1012 SMART helicmild6 876 959 IPR001650 -
Vra9g0739 1012 MobiDBLite consensus disorder prediction 352 379 - -
Vra9g0739 1012 Pfam Helicase conserved C-terminal domain 862 959 IPR001650 -
Vra9g0739 1012 MobiDBLite consensus disorder prediction 1 18 - -
Vra9g0739 1012 Gene3D - 366 451 IPR038718 -
Vra9g0739 1012 Gene3D - 611 990 IPR027417 -
Vra9g0739 1012 SMART ring_2 712 750 IPR001841 -
Vra9g0739 1012 MobiDBLite consensus disorder prediction 151 165 - -
Vra9g0739 1012 MobiDBLite consensus disorder prediction 471 491 - -
Vra9g0739 1012 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 605 985 IPR027417 -
Vra9g0739 1012 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 254 596 IPR027417 -
Vra9g0739 1012 ProSiteProfiles Zinc finger RING-type profile. 712 751 IPR001841 -
Vra9g0739 1012 CDD SF2_C_SNF 860 968 - -
Vra9g0739 1012 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 45 985 - -
Vra9g0739 1012 SMART ultradead3 265 575 IPR014001 -
Vra9g0739 1012 MobiDBLite consensus disorder prediction 151 174 - -
Vra9g0739 1012 MobiDBLite consensus disorder prediction 83 118 - -
Vra9g0739 1012 Pfam SNF2-related domain 272 674 IPR000330 GO:0005524|GO:0140658
Vra9g0739 1012 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 705 762 IPR013083 -
Vra9g0739 1012 MobiDBLite consensus disorder prediction 1 55 - -
Vra9g0739 1012 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 45 985 - -
Vra9g0739 1012 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 846 1011 IPR001650 -
Vra9g0739 1012 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 284 558 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0739 Vra-Chr9 8461252 8472899 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0739 1 917 RAD5 or RAD16-like Gene Family AT1G50410 54.458 0.0 898
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vra9g0739 SNF2_N 8.9e-71 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0739 - - gmx:100795142 1548.49