Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0716 ATGGAAAGGGTTGCTGAGCCGAAGTTACTTCCACGGAACTTGCCTATCCTGGTTGAGGTATCGAAAGCACACACATCTGCTGCAAGAGAGCCAGGTCAGAGACATAATCGCCAGGAGGTTTCTGGTGCTGCTGGGATTTCACTCAGAGAAGTGAATCAATTGTCCAAAACAAGGGATGTGCATGTCCCTCTTTCACATCTGGCCTCAATTAGAGAAGTGGCCCAGTTAACCAATGCACGAATATATTTGGTACAAGAAGATATGGGATTTGATGGTCGATCCTCTGAGGAGTCCCTCACCTTTGAGCCAACCATGACATGGAAGGGAAAGGGCTCCTCGCCAGAAGCTGAGGAGTTTGTGCCTGATGGTGATACATTGAAGGAAAGCAGCTATTCATTTGAGGATGGAGGTCCAAGTTTATTTGCTGGTGCTAGTCATCCCCCAGAGCCTGTTGATACAGATCTTATGAGAACAGTTTATGTACCTATAGGTCAAAACAAATCGGAGGCTGGTTGCTTGATCAAGAGCTTGCCCACAAAGGGCCCTTTTTTGGAAGATCTCTCAATTCGTGTTCCTGCAAAGAAACCAAATCCAGCTGTTCTTACCCCTGAGCAAAGTCTGGTTGAAGAAATAAATGACATAGGGAACTTGGCATTTCTGGGTCCTCGGGCATCACAGAATACTGAGAACTCTCTCCTACCTCCTGATGCTGAGGAAAAAGAATGTGTTTGGGATGCTTCTTTGCCTCCAAGTGGCAATGTCAGTCCACTCAGCAGTATTGATAGTACCGGTGTTGTCACTGCAATGAGCATTGTTAATAGTTGTGCTAGTACATATCGGAGTGATGCAATGACTAGTGATGGCATGCTTAGTTTAGATAGAAACTGTGATAGTACTAAAGGGAGTGTAAGGGGGGATTCACTGGAGAGTGCTAAAACTAGTGCTAGCCGGGCAAGTGATAGCAGTGGCCTCAGCGATGACAGCAACTGGAGCAACATAACTGGTAGTGCCAATAAGCCTCACAAAGGAAATGATCCTAGGTGGAAGGCTATTCTTGCCATCCGATTACGGGATGGAATTCTGGGCATGAGTCATTTTAGATTACTCAAACGTCTAGGATGTGGTGACATTGGAAGTGTATATCTTTCAGAACTGAGTGGAACTCGGTGTTATTTTGCAATGAAAGTTATGGATAAGGCATCCCTAGCAAGCAGAAAGAAGCTGACTAGAGCACAGACAGAGAGGGAGATATTGCAGTTGCTGGACCATCCATTTCTACCAACTTTGTATACACATTTTGAGACTGACAGATTCTCGTGTTTGGTGATGGAATATTGTCCAGGCGGTGATCTGCACACTTTAAGGCAGCGGCAACCTGGGAAACATTTCTCAGAATATGCAGCACGCTTTTATGCTGCGGAGGTCCTGCTTGCTCTTGAATATCTTCACATGCTTGGAGTGGTTTACAGAGACCTTAAACCCGAAAATGTGTTGGTCCGAGATGATGGTCACATTATGCTATCAGATTTTGATCTTTCCCTCAGATGTGCCGTGTCACCTACCCTTATTAGATCATCATATGATGGCGATCCTTCTAAACGGGCTGGCGGTGCATTTTGTGTGCAACCTGCATGCATTGAGCCATCATCAGTGTGCATCCAACCTGCATGTTTTATTCCTCGGTTGTTTCCTCAGAAAAACAAGAAGCTAAGGAAGCCAAGAGCTGATCCTGGATTGCCATCCAGCACCCTTCCAGAGCTTGTTGCGGAGCCTACTGCAGCTCGATCTATGTCCTTTGTTGGCACTCATGAGTACCTTGCCCCAGAAATTATCAAAGGAGAAGGTCATGGAAGTGCAGTTGATTGGTGGACTTTTGGAATTTTCTTGCATGAGCTGTTATATGGTAAAACCCCTTTCAAAGGGTCAGGAAACCGTGCTACACTTTTCAATGTAGTAGGCCAGCAGCTCAGGTTTCCTGAATCACCAGCAACCAGTTATGCCAGCAGGGATCTGATCCGTGGCTTACTAGTGAAGGAGCCACAGCATCGTCTAGGGGTTAAAAGGGGTGCAACAGAGATCAAGCAGCACCCTTTCTTTGAAGGCGTGAACTGGGCATTGATCAGGTGTAGCACGCCGCCAGAAGTGCCGAGACCGGTAGAAAATGAACTACCAGGGAAGGTTGGACCAGCTGATAATGCCGTTGGGCTTGGCAGCACTAGTAAGAGGATAGTTGGTACTACTACTGACAACATGAAGTCTGGGGGTAAATATCTGGACTTTGAGTTCTTTTAG 2292 0.4629 MERVAEPKLLPRNLPILVEVSKAHTSAAREPGQRHNRQEVSGAAGISLREVNQLSKTRDVHVPLSHLASIREVAQLTNARIYLVQEDMGFDGRSSEESLTFEPTMTWKGKGSSPEAEEFVPDGDTLKESSYSFEDGGPSLFAGASHPPEPVDTDLMRTVYVPIGQNKSEAGCLIKSLPTKGPFLEDLSIRVPAKKPNPAVLTPEQSLVEEINDIGNLAFLGPRASQNTENSLLPPDAEEKECVWDASLPPSGNVSPLSSIDSTGVVTAMSIVNSCASTYRSDAMTSDGMLSLDRNCDSTKGSVRGDSLESAKTSASRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRLRDGILGMSHFRLLKRLGCGDIGSVYLSELSGTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIRSSYDGDPSKRAGGAFCVQPACIEPSSVCIQPACFIPRLFPQKNKKLRKPRADPGLPSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPESPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPVENELPGKVGPADNAVGLGSTSKRIVGTTTDNMKSGGKYLDFEFF* 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0716 763 MobiDBLite consensus disorder prediction 290 343 - -
Vra9g0716 763 Gene3D Transferase(Phosphotransferase) domain 1 450 517 - -
Vra9g0716 763 PANTHER FLIPPASE KINASE 1-RELATED 77 763 - -
Vra9g0716 763 ProSitePatterns Serine/Threonine protein kinases active-site signature. 487 499 IPR008271 GO:0004672|GO:0006468
Vra9g0716 763 SMART serkin_6 366 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0716 763 Pfam Protein kinase domain 596 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0716 763 Pfam Protein kinase domain 367 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0716 763 SUPERFAMILY Protein kinase-like (PK-like) 347 720 IPR011009 -
Vra9g0716 763 ProSiteProfiles Protein kinase domain profile. 366 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0716 763 MobiDBLite consensus disorder prediction 291 339 - -
Vra9g0716 763 Gene3D Transferase(Phosphotransferase) domain 1 595 716 - -
Vra9g0716 763 CDD STKc_phototropin_like 364 718 - -
Vra9g0716 763 Gene3D Phosphorylase Kinase; domain 1 364 449 - -
Vra9g0716 763 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 77 763 - -
Vra9g0716 763 MobiDBLite consensus disorder prediction 24 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0716 Vra-Chr9 8121020 8125419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0716 1 763 AGC Kinase Gene Family AT2G44830 66.624 0.0 939
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vra9g0716 Pkinase 1.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0716 - - gmx:100792314 1394.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0716 9 8121020 8125419 Vra9g0716 9 8121020 8125419 ECH
Vra9g0716 9 8121020 8125419 Vra4g0958 4 16678118 16682540 PCT