Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0714 ATGAACCCTCATGCTTCAAACACCCACTTGAATGCTCCTCATCTCTCCGACCTCCCTGCAACGACGCCGTTTCAGGATGCGTCGCCATCGTTATGGCCCACGGCGCTGTCCAGCCGCAGCTCCAGCTTCCGGAGCATTTTCTCCGCCGAGAACTGGGCGGAGCTGCCGCTGAAAGAGGACGACGCTGACGACATGGTTATCTACGGCACTCTGCTTGAGGCCGCCGCCACCACCGGATGGTTCCCGGAAAATGGCAGTGGGGTGAGCAAAGTTGCAGTTAAAAAGGAAAATGGGGGTGAAAGCAGTGGCACCAAAGGCGGGAGTGGAACTCACGCGCCTCCGGTGAAGGGGTTGAGCTACCGAGGCGTGCGGAGGAGGCCGTGGGGGAAGTTTGCGGCGGAGATAAGAGATGCTAAGAGGAATGGTGTGAGAGTGTGGCTTGGAACCTATGAAACTGCTGAGGACGCAGCTTTGGCTTATGATCGAGCTGCGTTTCGAATGCACGGCTCCAAAGCAAAGCTCAATTTTCCACATTTGATTGGTTCGGATGAAGCCGAACCAGTTAGGGTTACATCAAAGAAACGTCCGTTGAATGTTTTACCATAA 606 0.5512 MNPHASNTHLNAPHLSDLPATTPFQDASPSLWPTALSSRSSSFRSIFSAENWAELPLKEDDADDMVIYGTLLEAAATTGWFPENGSGVSKVAVKKENGGESSGTKGGSGTHAPPVKGLSYRGVRRRPWGKFAAEIRDAKRNGVRVWLGTYETAEDAALAYDRAAFRMHGSKAKLNFPHLIGSDEAEPVRVTSKKRPLNVLP* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0714 201 Gene3D AP2/ERF domain 119 178 IPR036955 GO:0003700|GO:0006355
Vra9g0714 201 ProSiteProfiles AP2/ERF domain profile. 119 177 IPR001471 GO:0003700|GO:0006355
Vra9g0714 201 SMART rav1_2 119 183 IPR001471 GO:0003700|GO:0006355
Vra9g0714 201 CDD AP2 120 179 IPR001471 GO:0003700|GO:0006355
Vra9g0714 201 PRINTS Ethylene responsive element binding protein signature 120 131 IPR001471 GO:0003700|GO:0006355
Vra9g0714 201 PRINTS Ethylene responsive element binding protein signature 143 159 IPR001471 GO:0003700|GO:0006355
Vra9g0714 201 MobiDBLite consensus disorder prediction 1 15 - -
Vra9g0714 201 Pfam AP2 domain 120 169 IPR001471 GO:0003700|GO:0006355
Vra9g0714 201 PANTHER DNA-BINDING DOMAIN 25 197 IPR044808 GO:0003700|GO:0009873
Vra9g0714 201 MobiDBLite consensus disorder prediction 95 119 - -
Vra9g0714 201 SUPERFAMILY DNA-binding domain 120 178 IPR016177 GO:0003677
Vra9g0714 201 MobiDBLite consensus disorder prediction 1 22 - -
Vra9g0714 201 PANTHER BNAC04G53270D PROTEIN 25 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0714 Vra-Chr9 8091535 8092287 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0714 39 195 AP2-EREBP Transcription Factor Family AT2G44840 58.599 1.34e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra9g0714 AP2 3.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0714 K09286 K13432 gmx:100804762 253.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0714 9 8091535 8092287 Vra9g0714 9 8091535 8092287 ECH