Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0713 ATGGCCAATGATTTGTCTTCAGGTGTTCAATCATTCGAGCTCGAACACGATCCCCACATTCTTGTAAATGTTTCCGACCAAGAAACCTTTTACTCTTCCTCGTACCAGAATCCTATAGCGAACGCTTGCCATGTCAATGACGCGACTCAATTATTTGCATGCAAAATGGAAGCACCAGTGGCACCGCGTGAGGAGCACGCGCCTCCGAAGTGGAAGCACTTCCGAGGAGTGAGGAGGCGGCCGTGGGGGAAGTTCGCGGCAGAGATATGGGATCCGAAGAGAAAACATGGAAGGGTATGGCTGGGAACGTATGAGACTGAAGAGGAAGCAGGTTTGGCTTATGATAGGGCTGCTTTCAAGATGAGAGGTAGCAAAGCAAAGTTGAATTTTCCACACTTGATTGGATCCCACGCGCCGCCGGAGAGAGTGGGAGTGGCGGGTGTGGCTCGGAAGCCGAACCTGCCGGAGGCTCGTTTGCCACCTTTGTCTGCGGCGGAGGATGGTTCACAGCCACAAGGGTTAAAGAAGAGGAGAAACCTAGCTGATTTGCTTAATAGGTTAGCCAAGAATAGAAGTCAAGTATGTATGTATGTATGA 597 0.5059 MANDLSSGVQSFELEHDPHILVNVSDQETFYSSSYQNPIANACHVNDATQLFACKMEAPVAPREEHAPPKWKHFRGVRRRPWGKFAAEIWDPKRKHGRVWLGTYETEEEAGLAYDRAAFKMRGSKAKLNFPHLIGSHAPPERVGVAGVARKPNLPEARLPPLSAAEDGSQPQGLKKRRNLADLLNRLAKNRSQVCMYV* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0713 198 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 9 194 - -
Vra9g0713 198 Gene3D AP2/ERF domain 72 132 IPR036955 GO:0003700|GO:0006355
Vra9g0713 198 ProSiteProfiles AP2/ERF domain profile. 73 131 IPR001471 GO:0003700|GO:0006355
Vra9g0713 198 PANTHER DNA-BINDING DOMAIN 9 194 IPR044808 GO:0003700|GO:0009873
Vra9g0713 198 MobiDBLite consensus disorder prediction 154 174 - -
Vra9g0713 198 SUPERFAMILY DNA-binding domain 73 132 IPR016177 GO:0003677
Vra9g0713 198 Pfam AP2 domain 73 123 IPR001471 GO:0003700|GO:0006355
Vra9g0713 198 CDD AP2 72 133 IPR001471 GO:0003700|GO:0006355
Vra9g0713 198 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Vra9g0713 198 PRINTS Ethylene responsive element binding protein signature 113 133 IPR001471 GO:0003700|GO:0006355
Vra9g0713 198 SMART rav1_2 73 137 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0713 Vra-Chr9 8086588 8087184 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0713 60 136 AP2-EREBP Transcription Factor Family AT2G44840 64.045 1.67e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra9g0713 AP2 2.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0713 K09286 - gmx:100792115 267.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0713 9 8086588 8087184 Vra9g0713 9 8086588 8087184 ECH
Vra9g0713 9 8086588 8087184 Vra4g0962 4 16745119 16746019 PCT