Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0712 ATGGCCACCACAACAACAACAACATCATCGTCATCATGTGATTTCTCATCCTTGGAATCTATTCAACACTATCTTCTTGAGCTCGAACCAGATTGTTCCAACACTCTCATGAGCGTTTACAGTCATCAAGTTTTGCATTCTTCAATGTACAAACCAATCTCGGAAGGTGTTCATGATGCAGATAATAATAACTTGTTGATAGAGGCGCGTGAGGGTCACGCGCCGCCGGTGTGGAAGCGTTTCAGAGGTGTGAGGCGACGGCCGTGGGGGAAGTTTGCTGCAGAGATAAGGGATCCGAAGAGGAACGGTGCGAGAATTTGGCTTGGAACTTATGAAAGTGAAGAAGAAGCTGGTTTGGCTTATGATAAAGCTGCATTTAAGATGCGTGGTAGCAAAGCTAAGTTAAATTTTCCTCATCTTATTGATTCTGATGTGTCTCTGAAACCTGTTAGAATGATGAAAGGTTTCAAGAAAAATGGTTTTGAATCTTATTCATCATTTTCACCACCTTCAGAGACAGTAAAAGAATCGAAAAAGAGGAAAAACTTACCTCAGTTGTTGAATAGGTTGGCCAAGAACAGAAGACAATTGCAGGTGTTTCAAACCTGTTTATACACAAATGATGTTAACGTTCATCATCTATGTTTTAATTAG 654 0.4067 MATTTTTTSSSSCDFSSLESIQHYLLELEPDCSNTLMSVYSHQVLHSSMYKPISEGVHDADNNNLLIEAREGHAPPVWKRFRGVRRRPWGKFAAEIRDPKRNGARIWLGTYESEEEAGLAYDKAAFKMRGSKAKLNFPHLIDSDVSLKPVRMMKGFKKNGFESYSSFSPPSETVKESKKRKNLPQLLNRLAKNRRQLQVFQTCLYTNDVNVHHLCFN* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0712 217 PRINTS Ethylene responsive element binding protein signature 81 92 IPR001471 GO:0003700|GO:0006355
Vra9g0712 217 PRINTS Ethylene responsive element binding protein signature 120 140 IPR001471 GO:0003700|GO:0006355
Vra9g0712 217 Gene3D AP2/ERF domain 79 139 IPR036955 GO:0003700|GO:0006355
Vra9g0712 217 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 10 195 - -
Vra9g0712 217 Pfam AP2 domain 80 130 IPR001471 GO:0003700|GO:0006355
Vra9g0712 217 CDD AP2 79 140 IPR001471 GO:0003700|GO:0006355
Vra9g0712 217 SUPERFAMILY DNA-binding domain 80 139 IPR016177 GO:0003677
Vra9g0712 217 ProSiteProfiles AP2/ERF domain profile. 80 138 IPR001471 GO:0003700|GO:0006355
Vra9g0712 217 PANTHER DNA-BINDING DOMAIN 10 195 IPR044808 GO:0003700|GO:0009873
Vra9g0712 217 SMART rav1_2 80 144 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0712 Vra-Chr9 8076861 8077759 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0712 80 152 AP2-EREBP Transcription Factor Family AT2G44840 73.973 1.57e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra9g0712 AP2 6.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0712 K09286 - gmx:100527194 247.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0712 9 8076861 8077759 Vra4g0963 4 16751464 16752410 PCT