Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0711 ATGAATTTCAACACCACTCTCGAATCCCATGATTATGCTCTTCTTCAATCCATTCAACGGTTCCTCCTCGACGATACCCAAGACTTCAATGCACTCACGGCGGTTTTGGCCGCACCCAACGCCGTTTCATCTCGGGGGAGCGGCGGCGGATCCACCTCCACCCTTTTCACCACTGCCATCAACATGGAAGAGCAAATAACTACTTCCACGGAGGCGCGTGAGGTGCCTGCGGAGGCGCGTGGAGAATACACGGAAGCGCGCAGTGAACACGCGTCTTACCAGAGGTTCAAGGGAGTGAGAAGAAGACCGTGGGGAAAGTTTGCGGCTGAGATAAGAGATCCAAAGAAGAACGGGGCGAGAGTTTGGCTTGGGACTTACGACTCGGCTGAGAGTGCGGCTTTGGCTTATGATCGAGCCGCTTTTGAAATGCGTGGCTCCAAAGCTAAGCTTAATTTTCCTCATTTGATTGGATGCCATGAGCCGAGCCAGAAAGAGAATGGCTAA 504 0.5278 MNFNTTLESHDYALLQSIQRFLLDDTQDFNALTAVLAAPNAVSSRGSGGGSTSTLFTTAINMEEQITTSTEAREVPAEARGEYTEARSEHASYQRFKGVRRRPWGKFAAEIRDPKKNGARVWLGTYDSAESAALAYDRAAFEMRGSKAKLNFPHLIGCHEPSQKENG* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0711 167 PANTHER DNA-BINDING DOMAIN 54 155 IPR044808 GO:0003700|GO:0009873
Vra9g0711 167 SUPERFAMILY DNA-binding domain 95 154 IPR016177 GO:0003677
Vra9g0711 167 ProSiteProfiles AP2/ERF domain profile. 95 153 IPR001471 GO:0003700|GO:0006355
Vra9g0711 167 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 13 54 155 - -
Vra9g0711 167 Gene3D AP2/ERF domain 94 154 IPR036955 GO:0003700|GO:0006355
Vra9g0711 167 Pfam AP2 domain 95 145 IPR001471 GO:0003700|GO:0006355
Vra9g0711 167 CDD AP2 94 155 IPR001471 GO:0003700|GO:0006355
Vra9g0711 167 PRINTS Ethylene responsive element binding protein signature 96 107 IPR001471 GO:0003700|GO:0006355
Vra9g0711 167 PRINTS Ethylene responsive element binding protein signature 135 155 IPR001471 GO:0003700|GO:0006355
Vra9g0711 167 SMART rav1_2 95 159 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0711 Vra-Chr9 8070273 8070992 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0711 66 161 AP2-EREBP Transcription Factor Family AT2G44840 64.356 1.14e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra9g0711 AP2 9.4e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0711 K09286 - gmx:100806359 194.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0711 9 8070273 8070992 Vra9g0711 9 8070273 8070992 ECH