Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0710 ATGGGAGAGGGGTCTGTTGAACTTGAGGCTATTATAAAGGAAGCTGTTGATCTGGAGAACATTCCTCTTGAAGAGGTTTTTGATAATCTCAAATGCACAAGAGAAGGTTTAACCTCTCAGCAAGTACAAGAGAGGCTAGACTTGTTTGGATACAATAAGCTTGAAGAAAAGAAGGAAAGTAAGATACTGAAGTTTTTGGGGTTTATGTGGAATCCTCTGTCATGGGTTATGGAAGCTGCTGCTATCATGGCCATAGGCATGGCACATGGAGGGAATGAAAGAGCAGATTATCAAGATTTTATTGGCATAGTTCTTTTGCTACTTATAAACTCCACCATCAGTTTCATAGAAGAAAACAATGCTGGCAATGCAGCTGCTGCCCTTATGGCCAGATTAGCCCCAAAAGCAAAGGTACTTCGTGATGGAAAATGGAGTGAAGAAGAAGCTTCGGTGTTGGTTCCTGGAGACATAATTAGCATCAAGCTTGGTGACATAATTCCTGCTGATGCACGTCTCCTTGAAGGTGATCCTTTGAAGATTGATCAGTCTGCTCTTACTGGGGAGTCACTTCCTGTCACCAAACACCCTGGAGAAGGAGTATATTCTGGTTCAACATGCAAGCAAGGAGAAATTGAGGCAGTGGTTATTGCAACCGGAGTTCACACCTTTTTTGGGAAAGCAGCTCATCTTGTGGAGAACACAACACATGTTGGACATTTCCAGCAGGTTCTAACATCTATTGGGAATTTCTGCATCTGTTCCATTGCTGTTGGTATGGTCATTGAAATCATTGTGATATATGCAATCCATAAAAAGGGATACAGAAATGGTATTGATAACCTTCTGGTACTATTAATTGGTGGCATCCCTATTGCAATGCCAACAGTCCTTTCTGTTACAATGGCTATTGGTTCACACCGGTTGTCTCAGCAGGGTGCCATAACAAAGAGAATGACTGCCATTGAAGAGATGGCTGGAATGGATGTGTTATGCAGTGACAAGACAGGCACATTAACTCTTAACAAGCTTTCAGTGGACAAGAATATCATTGAGGTTTTTGCTAAAAACGTTGACAGTGATATGGTTGTACTTATGGCCGCAAGAGCATCAAGGCTAGAGAACCAGGACGCAATTGATGGTGCTATAGTTTCAATGTTAGCAGACCCAAAGGAGGCAAGAGCTGGAATAAAAGAAGTTCACTTCCTTCCATTCAATCCAACTGATAAAAGAACTGCACTAACATACCTTGATGCTGCTGGTAAGATGCACAGGGTTAGCAAAGGAGCACCAGAGCAGATTCTCAATCTTGCATATAACAAATCAGAAATACAACAAAAGGTTCATGCAATCATTGACAAGTTTGCAGAACGTGGACTTCGTTCTCTTGCAGTTGCCCGCCAGGAAGTACCTGAGGGAAATAAAGACAGTCCAGGAGGACCATGGGAATTTGTTGGCCTTCTGCCTCTTTTCGATCCACCTCGCCATGATAGTGCAGAAACAATTAGAAGAGCTCTTGATCTTGGCGTGAGTGTCAAAATGATCACTGGTGATCAACTTGCAATAGGTAAGGAAACAGGAAGACGTCTTGGGATGGGGACTAACATGTATCCTTCTTCATCGCTACTTGGTGAAAATAAAGAAGGATTGGGTGCTGTCGCTGTTGATGATCTCATTGAGAATGCTGATGGTTTTGCTGGAGTCTTTCCTGAGCACAAGTATGAGATTGTGAAGAGGTTACAAGCTAGAAAACACATTTGCGGGATGACTGGTGATGGGGTGAACGATGCACCTGCCTTGAAGATAGCAGACATAGGTATTGCTGTAGCAGATGCCACAGATGCCGCCAGAAGCGCATCTGACATAGTCCTAACAGAACCTGGGTTGAGTGTGATCATAAGTGCAGTTTTAACTAGCCGTGCAATTTTCCAGAGAATGAAAAATTACACAATATATGCCATATCTATCACTATTCGTATTGTGCTTGGTTTCATGTTACTGAACAGCTTTTGGAAATTTGACTTTCCTCCCTTCATGGTTCTTGTCATTGCCATTCTCAATGATGGTACCATCATGACAATATCTAAAGATAGGGTTAAGCCCTCTCCATTTCCTGATAGTTGGAAGCTTAGTGAAATTTTTGCAACTGGGATTGTTCTTGGCAGCTATCTTGCTCTAATGACTGTGGTCTTCTTCTATATAGTTGTTGAAACAGACTTCTTTCCTAACAAATTTGGCGTGAGACACTTTCATTATGATCCAGATGCTGAGGACAGTGATCCAACCAAAAGTATGTTGGGATCTGCTGTCTATCTTCAAGTTAGTACCATTAGTCAAGCCTTAATTTTCGTGACAAGGTCAAGGGGTTGGTCCTACACAGAAAGACCTGGTCTTTTGCTTGTCACTGCCTTCATCATTGCTCAAGCGATTGCTACTGTTATATCTGCCACTCTCACTTGGGATGTTGCCGGGATCAGAAGAATCGGTTGGGGCTGGACAGGAGTTATTTGGCTTTACAATACTGTAACTTATTTATTTCTAGATCCTTTGAAGTTTGCAGTTCGTTATGCATTAAGTGGAAGGGCTTGGAATCTGGTGGTAAACCAAAGGACCGCATTCATCAACAAAAACGACTTTGGAAGAGAAGCTCGTGAGGCTGCATGGGCTACTGAGCAGAGAACCTTACATGGCCTCCAATCTGCTGAGCCAAAAGGGTTTACAGATAAGCACACCTTCAGAGAAATTAATACATTGGCAGAAGAGGCAAGGAGAAGAGCAGAGATAGCAAGGCTGAGAGAGCTTCACACTCTGAAAGGTAGAGTGGAATCATTTGCCAAGCTAAGGGGTTTGGACATAGATGCCATGAACGGACACTACACTGTCTAA 2883 0.4273 MGEGSVELEAIIKEAVDLENIPLEEVFDNLKCTREGLTSQQVQERLDLFGYNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIGMAHGGNERADYQDFIGIVLLLLINSTISFIEENNAGNAAAALMARLAPKAKVLRDGKWSEEEASVLVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKHPGEGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVENTTHVGHFQQVLTSIGNFCICSIAVGMVIEIIVIYAIHKKGYRNGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNIIEVFAKNVDSDMVVLMAARASRLENQDAIDGAIVSMLADPKEARAGIKEVHFLPFNPTDKRTALTYLDAAGKMHRVSKGAPEQILNLAYNKSEIQQKVHAIIDKFAERGLRSLAVARQEVPEGNKDSPGGPWEFVGLLPLFDPPRHDSAETIRRALDLGVSVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGENKEGLGAVAVDDLIENADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKIADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAISITIRIVLGFMLLNSFWKFDFPPFMVLVIAILNDGTIMTISKDRVKPSPFPDSWKLSEIFATGIVLGSYLALMTVVFFYIVVETDFFPNKFGVRHFHYDPDAEDSDPTKSMLGSAVYLQVSTISQALIFVTRSRGWSYTERPGLLLVTAFIIAQAIATVISATLTWDVAGIRRIGWGWTGVIWLYNTVTYLFLDPLKFAVRYALSGRAWNLVVNQRTAFINKNDFGREAREAAWATEQRTLHGLQSAEPKGFTDKHTFREINTLAEEARRRAEIARLRELHTLKGRVESFAKLRGLDIDAMNGHYTV* 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0710 960 Pfam haloacid dehalogenase-like hydrolase 327 603 - -
Vra9g0710 960 SFLD Haloacid Dehalogenase 313 640 - -
Vra9g0710 960 Gene3D - 343 490 IPR023299 GO:0000166
Vra9g0710 960 PRINTS P-type cation-transporting ATPase superfamily signature 181 195 - -
Vra9g0710 960 PRINTS P-type cation-transporting ATPase superfamily signature 331 345 - -
Vra9g0710 960 PRINTS P-type cation-transporting ATPase superfamily signature 485 496 - -
Vra9g0710 960 PRINTS P-type cation-transporting ATPase superfamily signature 507 517 - -
Vra9g0710 960 PRINTS P-type cation-transporting ATPase superfamily signature 589 608 - -
Vra9g0710 960 PRINTS P-type cation-transporting ATPase superfamily signature 612 624 - -
Vra9g0710 960 PANTHER PLASMA MEMBRANE ATPASE 4 940 - -
Vra9g0710 960 ProSitePatterns E1-E2 ATPases phosphorylation site. 333 339 IPR018303 -
Vra9g0710 960 Gene3D - 134 218 - -
Vra9g0710 960 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 36 815 IPR006534 GO:0008553|GO:0016021|GO:0120029
Vra9g0710 960 Gene3D - 909 960 - -
Vra9g0710 960 SUPERFAMILY Calcium ATPase, transduction domain A 134 231 IPR008250 -
Vra9g0710 960 PANTHER CALCIUM-TRANSPORTING ATPASE 4 940 - -
Vra9g0710 960 CDD P-type_ATPase_H 36 851 IPR006534 GO:0008553|GO:0016021|GO:0120029
Vra9g0710 960 Pfam Cation transporter/ATPase, N-terminus 20 83 IPR004014 -
Vra9g0710 960 Gene3D - 328 626 IPR023214 -
Vra9g0710 960 SMART Cation_ATPase_N_a_2 17 89 IPR004014 -
Vra9g0710 960 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 857 IPR023298 -
Vra9g0710 960 Gene3D - 96 824 - -
Vra9g0710 960 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 103 351 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra9g0710 960 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 564 666 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra9g0710 960 SUPERFAMILY HAD-like 327 636 IPR036412 -
Vra9g0710 960 SFLD p-type atpase 313 640 IPR044492 -
Vra9g0710 960 Pfam E1-E2 ATPase 132 310 - -
Vra9g0710 960 PRINTS H+-transporting ATPase (proton pump) signature 447 465 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra9g0710 960 PRINTS H+-transporting ATPase (proton pump) signature 561 577 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra9g0710 960 PRINTS H+-transporting ATPase (proton pump) signature 589 605 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra9g0710 960 PRINTS H+-transporting ATPase (proton pump) signature 620 645 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra9g0710 960 PRINTS H+-transporting ATPase (proton pump) signature 770 791 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0710 Vra-Chr9 8054919 8062416 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0710 1 960 Primary Pumps ATPases AT5G62670 78.980 0.0 1524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0710 K01535 - gmx:100794938 1735.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0710 9 8054919 8062416 Vra9g0710 9 8054919 8062416 ECH