Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0700 ATGGCTGAAAAAGATGATGGGTTGGGATTGGGGTTGAGTTTGAGATNGGGAGAAAATGATGATAATAACAGGAATGAACAACACCCTTTCAAAATGCACAAACCTCCTCAACCTGTTCCAAGCCAAAGGGCTTCTTCTTTCAATAGTGTGTTCCATTTCCATGGTGCGTCTCATGTGACCAATCGAAGCTCTGAGCCACCACCGTTCTTCTTTGGAATAGACGTGAACTTGCCGCCACCACCACCGTCATCGGTGTTACCATGCTACGAGGAGAACGGTGTGTCTTCGCCGAACAGTGCAGTTTCGAGCATCAGTGGGAAAAGGAGNGAAAGAGAGGAGAATGAGAGAGGATCATGTTCTCGAGGCGGAAGTGAAGATGATGATGGCGGAGGGTGTGGTGGTGATGCCGATGGGGACACATCCAGGAAGAAGCTGAGGTTGTTGAAAGAACAGGCCTTGGTTCTTGAAGAAACATTCAAGGAACACAACACTTTGAATCCTAAACAAAAGCAAGCTTTGGCAAAACAGTTGAATCTGAGTCCTAGACANGTTGAAGTGTGGTTTCAAAACAGAAGAGCAAGGACCAAGCTGAAGCAGACTGAAGTGGATTGTGAATACTTAAAGAAGTGCTATGAGAATCTAACGGAGGACAATAGGAGGCTACAGAAGGAAGTGCAAGAGCTAAGAGCATTGAAGTTTTCCCCACAGCTNTACATGCACATGAACCCTCCAACCACTCTTACAATGTGNCCTTCCTGTGAGCGTGTTGCTGTCTCATCTGCATCCNCCTCNTCGGCCGCCATGCCTTCTGTGCCGCCTCCAGCCAATCACAANCCATTAAGTCCTACCATCCGGCGGCCGGTGCCNGTCAACCCTTGGGCNGCNNTG 888 0.4797 MAEKDDGLGLGLSLRXGENDDNNRNEQHPFKMHKPPQPVPSQRASSFNSVFHFHGASHVTNRSSEPPPFFFGIDVNLPPPPPSSVLPCYEENGVSSPNSAVSSISGKRXEREENERGSCSRGGSEDDDGGGCGGDADGDTSRKKLRLLKEQALVLEETFKEHNTLNPKQKQALAKQLNLSPRXVEVWFQNRRARTKLKQTEVDCEYLKKCYENLTEDNRRLQKEVQELRALKFSPQLYMHMNPPTTLTMXPSCERVAVSSASXSSAAMPSVPPPANHXPLSPTIRRPVPVNPWAAX 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0700 296 MobiDBLite consensus disorder prediction 106 123 - -
Vra9g0700 296 MobiDBLite consensus disorder prediction 1 47 - -
Vra9g0700 296 CDD homeodomain 142 199 IPR001356 GO:0003677
Vra9g0700 296 MobiDBLite consensus disorder prediction 264 296 - -
Vra9g0700 296 Pfam Homeobox associated leucine zipper 198 231 IPR003106 GO:0006355|GO:0043565
Vra9g0700 296 Gene3D - 147 196 - -
Vra9g0700 296 SUPERFAMILY Homeodomain-like 128 199 IPR009057 -
Vra9g0700 296 Pfam Homeodomain 142 196 IPR001356 GO:0003677
Vra9g0700 296 Pfam HD-ZIP protein N terminus 1 112 IPR006712 GO:0005634
Vra9g0700 296 MobiDBLite consensus disorder prediction 76 140 - -
Vra9g0700 296 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 3 295 - -
Vra9g0700 296 SMART halz 198 241 IPR003106 GO:0006355|GO:0043565
Vra9g0700 296 SMART HOX_1 140 202 IPR001356 GO:0003677
Vra9g0700 296 ProSitePatterns 'Homeobox' domain signature. 173 196 IPR017970 GO:0000981|GO:0006355
Vra9g0700 296 ProSiteProfiles 'Homeobox' domain profile. 138 198 IPR001356 GO:0003677
Vra9g0700 296 PANTHER - 3 295 - -
Vra9g0700 296 Coils Coil 204 231 - -
Vra9g0700 296 MobiDBLite consensus disorder prediction 89 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0700 Vra-Chr9 7946127 7949261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0700 60 255 Homeobox Transcription Factor Family AT3G60390 66.047 1.51e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vra9g0700 HD-ZIP_N 3.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0700 K09338 - gmx:100810641 354.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0700 9 7946127 7949261 Vra9g0700 9 7946127 7949261 ECH
Vra9g0700 9 7946127 7949261 Vra4g0973 4 16827373 16830839 PCT