Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0697 ATGTCTCTCCACCGCCATGTTTGCAGAACCTCAAAGCCATCAAAGATCCCTTGGAAGTACAAGCAGTTCGCCATAGCACAGGGGCAGAAGTCTGTTACTGATTATCTCCACGCCACGCGCTGCATTCCTTACGCCTTCGCTGATCAAATCTCCAAGAACTCCAACAATGCCCTCATGAATCTCATCACCAAGCTCAGTGCTTTCTCCCCTGTCCACTATCCCCACAACCTCAATAAGTTCCTCAGGTACAATCCCATCAACGAATTCGAGTTCTTCTTTGAGAGCATTGGCATACACCCTTCAAAGTTCCCCTCTTTGTTTCCCCAGAACAAGTTCTTCTTTTCAGAAGATGAGACCCTTTTGGATACTGCTTCTGTTCTCAGCGAATTTGGGTTTCCCTGGGACAAGCTTGGGGTGCTGTATGAGGAGAGTGGGTGGGTCTTCAAGTGGGGTGCTTCTGAATTGAAGGATAGGCTTTGTGGGTTCAAAGGGTATGGTTTTTGCAATGTGCAGGTTGTGGGGATATGCTTGGCCTTCCCATTTGTGTTTGATGGCCAGAAGGGTGCTGAGGTTGAGGCTTTGTTTTCTGATCTGAGGTTGCTGTTTGGGAAGTTTGGTTTGGCTGAGCGTGTTGAAGAGAAGGGGAATAATGGTGTGGATGATTGGGTTGGGTTGTGTAGGAAGATAAGGTTGTTTTATGATTTGAATGGAGGGAAGAACATAGGGGAGTTAATTGGAGGGAACAATGGCATTGGTGTAGGTGTTGTTTTTGAGCATGGGGAAGAGGAGTTGGTTCAAGCAATTGAGTATTTTTGTAGGTTTGGTGCGAAGAAAGAGGAAGTGGCACGATTGATTGTGAATGGACCGGAATTGTTAGAGCTTGTTTTGAAGATGGGAAATTTCAATGTGTTGAAGCTATTGAAACACTTTGGAATGAATTCCAATGATCTTGATATTGTTAAGAGGGACTACGCTCATGTGTTGGGGACAGTCAAGCCGTGTAACCTGCCAAATGTGATGAGAGCTTTGGGTTTACATGAGTGGTTCTTTGAGAAGATTAAGGATGGGAATCATAGTTTGTTGGTTAGTTTTGTCGCGAACAATGGCAAAGTGGACCGAGTTAAAGGTTATCTAAGTTTTTTGAAGGCTATTGAGGTGTCTAAAACTCCAATTCACAAAATGAGTAAGTTGAACTTCTTGCATGGCATTGGTTTTGGAGAAAATGCTTTGACCATGTATATTTTGTCTTACATGCACGGAACAAGTGATCAGTTACAAAAGAGATTTGATTGCCTTCTACATCTTGGGATTGAGTTTTCAAAGCTCTGTAAAATGATCACGGTTCATCCCAAGATTCTTAGCCAAAACCCTGAAAGTTTGGAGCAAAAGATTAATTTCTTGTGTCAGGAAATGGGACAGTCACTTGAGATTTTGGTGACTTTTCCATCATTCTTGTGCTTTGACTTAGAGAATCGCATTAAGCCCAGGTATAGGTTCCATATGTGGCTTATGGAAAAGGGTCTGTCTTCCAAAAGATATTCTATTGCAAGCATGGTTGCAACAAGCAACAGGACTTTAGTTTCCCGTGCTTTTAAAATCCACCCTGCTGCTCCGAAACATTGGTTTGAGCAATTTTATCCCTGA 1644 0.4307 MSLHRHVCRTSKPSKIPWKYKQFAIAQGQKSVTDYLHATRCIPYAFADQISKNSNNALMNLITKLSAFSPVHYPHNLNKFLRYNPINEFEFFFESIGIHPSKFPSLFPQNKFFFSEDETLLDTASVLSEFGFPWDKLGVLYEESGWVFKWGASELKDRLCGFKGYGFCNVQVVGICLAFPFVFDGQKGAEVEALFSDLRLLFGKFGLAERVEEKGNNGVDDWVGLCRKIRLFYDLNGGKNIGELIGGNNGIGVGVVFEHGEEELVQAIEYFCRFGAKKEEVARLIVNGPELLELVLKMGNFNVLKLLKHFGMNSNDLDIVKRDYAHVLGTVKPCNLPNVMRALGLHEWFFEKIKDGNHSLLVSFVANNGKVDRVKGYLSFLKAIEVSKTPIHKMSKLNFLHGIGFGENALTMYILSYMHGTSDQLQKRFDCLLHLGIEFSKLCKMITVHPKILSQNPESLEQKINFLCQEMGQSLEILVTFPSFLCFDLENRIKPRYRFHMWLMEKGLSSKRYSIASMVATSNRTLVSRAFKIHPAAPKHWFEQFYP* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0697 547 Pfam mTERF 422 524 IPR003690 GO:0003690|GO:0006355
Vra9g0697 547 Gene3D Transcription termination factor 3, mitochondrial 64 209 IPR038538 -
Vra9g0697 547 Gene3D Transcription termination factor 3, mitochondrial 259 545 IPR038538 -
Vra9g0697 547 PANTHER TRANSCRIPTION TERMINATION FACTOR MTEF18, MITOCHONDRIAL 10 544 - -
Vra9g0697 547 SMART mt_12 475 509 IPR003690 GO:0003690|GO:0006355
Vra9g0697 547 SMART mt_12 443 474 IPR003690 GO:0003690|GO:0006355
Vra9g0697 547 PANTHER CGI-12 PROTEIN-RELATED 10 544 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0697 Vra-Chr9 7925087 7927212 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vra9g0697 mTERF 9.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0697 - - var:108346236 914.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0697 9 7925087 7927212 Vra9g0697 9 7925087 7927212 ECH