Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0689 ATGCATGCGAGAAAAATGCACGGGAAAAAGGAGCAAGAAGAGTATATAAGGAAAGGGCCATGGAAAGCAGAAGAAGATGAGGTTTTACTGAACCATGTGAAGAAGTATGGTCCCAGAGATTGGAGCTCCATTCGATCCAAGGGTCTTCTTCAAAGAACTGGCAAGTCCTGTCGTCTTCGTTGGGTCAATAAGCTTCGACCAAACCTCAAGAATGGATGCAAGTTTTCACTCGAGGAAGAGAGGATTGTGATAGAGTTGCAGGCACAATTTGGGAACAGGTGGGCTAAGATTGCATCCTTTTTGTCAGGGAGAACAGACAATGATGTGAAAAATTTCTGGAGCAGTAGGCAAAAGAGGTTGGCCAGGATCCTACAGACATCGGGAACAACTTCCAAATCACAGAAAAATAAAACAAAAGTTCCTACCCTTCTTGATGTTCCAACTTTGGAGGCTCCAAAATTCAGTTCTTCATCAGAGGGAGAATCATCATCAAAGCCTCAGTCATACTCACTACCTTTGATTGAGAATTCTGAGGTTATCAAAATGGTATCTTTGCCAGATCTCATAAAGTCTGAGTTACCTAGTTCTGACCCAATCCATGTTGAACAAGGTTTTACCCCTTTTGAGAGCTATAACAGTAGTGAGCAGATTCAACAGATTTCCTTTCCTCAGATTCCAGAACTCCAAAATGATCTCACATTCCCTATGGGAAGCCAAGATGTCTTAGCCAGAATCGATGAGCCATATTTCGTTGATGACTATTGTGCTCTTGATGATGCATCTGAGTTTGGAATAGGTCTGCAGCACCCCATTGGATTCCCTTTCTTCGAGCCACCAGGAAGTTGCAGAATTGAGACAAGGGATACCATTGATAAGTTCAAAAGCAGTGACAGCTTCTTCGATGACTTCCCTGTGGACATGTTTGATCAAATGGACCCACCTGCAAGCCCTTCTTACTTATGA 963 0.4299 MHARKMHGKKEQEEYIRKGPWKAEEDEVLLNHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFGNRWAKIASFLSGRTDNDVKNFWSSRQKRLARILQTSGTTSKSQKNKTKVPTLLDVPTLEAPKFSSSSEGESSSKPQSYSLPLIENSEVIKMVSLPDLIKSELPSSDPIHVEQGFTPFESYNSSEQIQQISFPQIPELQNDLTFPMGSQDVLARIDEPYFVDDYCALDDASEFGIGLQHPIGFPFFEPPGSCRIETRDTIDKFKSSDSFFDDFPVDMFDQMDPPASPSYL* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0689 320 Pfam Myb-like DNA-binding domain 21 71 - -
Vra9g0689 320 Gene3D - 73 142 - -
Vra9g0689 320 CDD SANT 74 113 IPR001005 -
Vra9g0689 320 CDD SANT 20 65 IPR001005 -
Vra9g0689 320 SUPERFAMILY Homeodomain-like 16 113 IPR009057 -
Vra9g0689 320 Pfam Myb-like DNA-binding domain 74 113 IPR001005 -
Vra9g0689 320 ProSiteProfiles Myb-like domain profile. 74 117 IPR001005 -
Vra9g0689 320 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
Vra9g0689 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 69 IPR017930 -
Vra9g0689 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 121 IPR017930 -
Vra9g0689 320 PANTHER TRANSCRIPTION FACTOR DUO1 6 318 - -
Vra9g0689 320 SMART sant 71 119 IPR001005 -
Vra9g0689 320 SMART sant 17 67 IPR001005 -
Vra9g0689 320 Gene3D - 18 70 - -
Vra9g0689 320 PANTHER TRANSCRIPTION FACTOR DUO1 6 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0689 Vra-Chr9 7876456 7879095 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0689 4 317 MYB Transcription Factor Family AT3G60460 48.328 1.65e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra9g0689 Myb_DNA-bind_6 5.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0689 K09422 - gmx:100805384 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0689 9 7876456 7879095 Vra9g0689 9 7876456 7879095 ECH