Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0683 ATGGAAAATCATGCTCACTTCTTCAATTCCTTTGCCTCAACTTCCACTTCTACCACTTCTACCACCACAAACACCACAACCACAAACACTTCTATTTCTAGCACATCATCGTCATCTTCAACCTCAAACTCCTCAAACTCAGATTCCACTTCTCAAACCTTGTTGGAAAATGAAAAGGAATCAAAAGGGTGCTGCAAGAAGAGGAAGTTGGAGAATCCTTCATACAGGGGTGTGAGGATGAGGAACTGGGGCAAATGGGTGTCTGAAATCCGTGAGCCAAGGAAAAAATCGAGAATTTGGCTAGGAACATACCCTACTGCAGAAATGGCTGCTAGAGCACATGATGTAGCTGCCTTAGCCATCAAGGGTCATTCTGCATACCTCAATTTCCCCGAATTGGCTCAAGAACTTCCGACACCAGCTTCCACTTCACCTAAGGACATTCAAGCTGCAGCAGCAAAAGCAGCAAACACACCCTTTGATGTCAATCATTGCCAAACTACTATTGAAGATGAAGAAGCACAAGAAGAACCAAACCAAACACAAAATGTCTCATCTTCAACACTCTCAATGTACAACACACAACAACACTCTTCAAGCTCAAACTCCACCAATGATGATGACACTTTGTTTGATCTACCAGATCTTTTCCCTGATGAACTTTGCTCCTATTCTTCTTCTTGGCATTTGTGTGCAGTTGGTAGTGGATTTAGGCTTGAGGAATCACTTTTTTGGGAGAATTATTAG 747 0.4257 MENHAHFFNSFASTSTSTTSTTTNTTTTNTSISSTSSSSSTSNSSNSDSTSQTLLENEKESKGCCKKRKLENPSYRGVRMRNWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPELAQELPTPASTSPKDIQAAAAKAANTPFDVNHCQTTIEDEEAQEEPNQTQNVSSSTLSMYNTQQHSSSSNSTNDDDTLFDLPDLFPDELCSYSSSWHLCAVGSGFRLEESLFWENY* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0683 248 CDD AP2 73 133 IPR001471 GO:0003700|GO:0006355
Vra9g0683 248 SMART rav1_2 74 137 IPR001471 GO:0003700|GO:0006355
Vra9g0683 248 Gene3D AP2/ERF domain 74 132 IPR036955 GO:0003700|GO:0006355
Vra9g0683 248 PANTHER ETHYLENE RESPONSE FACTOR 14 248 - -
Vra9g0683 248 ProSiteProfiles AP2/ERF domain profile. 74 131 IPR001471 GO:0003700|GO:0006355
Vra9g0683 248 SUPERFAMILY DNA-binding domain 74 132 IPR016177 GO:0003677
Vra9g0683 248 Pfam AP2 domain 73 124 IPR001471 GO:0003700|GO:0006355
Vra9g0683 248 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 248 - -
Vra9g0683 248 MobiDBLite consensus disorder prediction 1 58 - -
Vra9g0683 248 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Vra9g0683 248 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
Vra9g0683 248 MobiDBLite consensus disorder prediction 169 207 - -
Vra9g0683 248 MobiDBLite consensus disorder prediction 178 207 - -
Vra9g0683 248 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0683 Vra-Chr9 7798511 7799655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0683 66 244 AP2-EREBP Transcription Factor Family AT2G44940 53.398 2.78e-64 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra9g0683 AP2 1.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0683 - - vra:106773878 410.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0683 9 7798511 7799655 Vra9g0683 9 7798511 7799655 ECH