Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0673 ATGTTGGACTACGAATGGGGAAACCCGTCTTCAATAATGCTAACAGGAAACGAGGAGACCGCAGCCGGAGCTTCCGACCAGACCCACCGTCAAATCTTCGACCACTACGCCTCGCACTCCCTCATCCCCGACCACTTTCTGCACGCGCCAACTCACTCCGCCGTCACCACTGCCGCCGCCGCCACCGTCGACTTCACCAACCACCACCACCACCACTTCAACCCCCAGCCGCACCACCACCACCTCAACAACCACCACCACCACCCCTTCTTCGACCCACGCGCCTTCCACGGCGCGTCCTCCGCCTCCTACCCCCCACCCCCTTCCATGCTCTCCCTTGACCCGCTTCCCCACGTCAACGCAGCCAACTGCGGCCCCGGGCCCGGACCCGGCCCGGGCGGACTCCTCCTCGTTCCCAAGTCCGAGGACGTCGGCCGACCCATGGACTTTGTCGGCTCTCGAATTGGCCTAAATCTCGGTGGGCGGACGTATTTCTCCTCCTCCGAGGACGATTTCGTGAGCCGTCTCTACCGTCGGTCTCGGCCGGCGGAATCCGGTTCGGCGGCTTCCTCCAACTCCCCGCGCTGCCAGGCCGAGGGATGCAATGCTGATCTGTCTCAGGCCAAGCACTACCACCGACGCCACAAGGTGTGCGAGTTCCACTCGAAAGCCGCCACGGTCATCGCAGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGGTTCCATCTTCTCTCTGAATTTGATAACGGAAAACGTAGCTGCAGGAAGAGATTGGCAGATCACAATCGCCGCAGAAGAAAAACTCAGCAACCATCTCAAGAAATTCAGAAATCTCAACCCTCTTTGGATAATGTTGCAAGATCTCCACCTGACTCCGGAGCTCAGTCGTCGTCGGTGACGGTGGCGGTGTCACCGCCGGACTATTTCCGGCAGAGGCCGTATCAGAGCACAAACCCTTCTACAAATTCAAGCTCACTGTTTTTCTCCAGCGGGTAG 1002 0.5978 MLDYEWGNPSSIMLTGNEETAAGASDQTHRQIFDHYASHSLIPDHFLHAPTHSAVTTAAAATVDFTNHHHHHFNPQPHHHHLNNHHHHPFFDPRAFHGASSASYPPPPSMLSLDPLPHVNAANCGPGPGPGPGGLLLVPKSEDVGRPMDFVGSRIGLNLGGRTYFSSSEDDFVSRLYRRSRPAESGSAASSNSPRCQAEGCNADLSQAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQPSQEIQKSQPSLDNVARSPPDSGAQSSSVTVAVSPPDYFRQRPYQSTNPSTNSSSLFFSSG* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0673 333 MobiDBLite consensus disorder prediction 262 333 - -
Vra9g0673 333 Gene3D - 186 257 IPR036893 GO:0003677|GO:0005634
Vra9g0673 333 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 87 316 IPR044817 GO:0003677
Vra9g0673 333 MobiDBLite consensus disorder prediction 274 333 - -
Vra9g0673 333 SUPERFAMILY SBT domain 194 273 IPR036893 GO:0003677|GO:0005634
Vra9g0673 333 ProSiteProfiles Zinc finger SBP-type profile. 193 270 IPR004333 GO:0003677
Vra9g0673 333 Pfam SBP domain 196 269 IPR004333 GO:0003677
Vra9g0673 333 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 8 87 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0673 Vra-Chr9 7691408 7694173 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0673 1 243 SBP-box Gene Family AT1G02065 44.615 1.56e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vra9g0673 SBP 4.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0673 - - gmx:100802206 515.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0673 9 7691408 7694173 Vra9g0673 9 7691408 7694173 ECH