Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0672 ATGAACTTTGGAGACACCACCAACACCTTCACCCCCACAAAACAGGAAACCAGTAACAACATTCTTTCCTACTCATCATGCCTACAACCTACTACTCCTAATTCTACCCACATCACCACGCCGCCGCCGGACAGTTACGCCGCCGCTCACCGCCGCCAACTATACGCCAGAGATGGGTCTCACGTGCACTGGGACCCTCACCTCACGTGCTTGCATCTCGGTAAGAGACATTACTTTGAGGATGTTACTGTCGATGATGTTAATAAATATAATAACAATAGTAATAATGTTACCACTCTGGGGAAACCACACGTGTGCCGCGTTCCTGGTGGTGGTGTTGTTATTTCGGGGAGCCGACACGTGGGCGCTGACGATGGTGATATTACACTCGGGAATCGGCACGTGTACGGCAGTGATGATGGTGGTGGTTACTTTTCAGAGAGCAACGATAAGAGAGCGCGGGGGTGTCATGGAGGAGCTACGGGTGGGGGTGGCCGGAGCGCGAAAACGGCGGCGTTTGGGATGGTTCCGAGGTGTCAGGTGGAGGGGTGCCACGTGGCGTTGGTGAATGCGAAAGAGTACCATAGGAGGCACAGAGTTTGCGATATGCATTCGAAGGCACCCAAAGTTGTGGTGTTGGGTTTGGAGCAGAGATTCTGTCAGCAGTGTAGCAGGTTTCATGTGGTGTCAGAGTTTGACGACTCAAAGAGAAGTTGCAGGAGAAGATTAGCAGGCCATAATGAGAGAAGAAGAAAAAGCTCTCACCTTTCTGTTACCAGAAGTTCTAGACAAGGGTGTGCTCTCTCTCTTCTGTCATTTGGGAGCAGTGATGCTGATCTCTCTACAAGATGCAGTGCAGCATTGCTTGAACTGATAGCAGAAAACCGTGCTGCTCTAATGACAAGACAACAAGAAGAACATGTTTATGTTGTGGGCCACCATGATGATGATGCAGTGGATGAAGAAGAACAAGAGTTTGTCGAGTCAAATTATTTTCCTCAGCACATGTTTTTCCAGACACAATAA 1026 0.4932 MNFGDTTNTFTPTKQETSNNILSYSSCLQPTTPNSTHITTPPPDSYAAAHRRQLYARDGSHVHWDPHLTCLHLGKRHYFEDVTVDDVNKYNNNSNNVTTLGKPHVCRVPGGGVVISGSRHVGADDGDITLGNRHVYGSDDGGGYFSESNDKRARGCHGGATGGGGRSAKTAAFGMVPRCQVEGCHVALVNAKEYHRRHRVCDMHSKAPKVVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHLSVTRSSRQGCALSLLSFGSSDADLSTRCSAALLELIAENRAALMTRQQEEHVYVVGHHDDDAVDEEEQEFVESNYFPQHMFFQTQ* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0672 341 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 129 335 IPR044817 GO:0003677
Vra9g0672 341 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 19 89 IPR044817 GO:0003677
Vra9g0672 341 ProSiteProfiles Zinc finger SBP-type profile. 176 253 IPR004333 GO:0003677
Vra9g0672 341 SUPERFAMILY SBT domain 177 255 IPR036893 GO:0003677|GO:0005634
Vra9g0672 341 Pfam SBP domain 179 252 IPR004333 GO:0003677
Vra9g0672 341 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 129 335 - -
Vra9g0672 341 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 19 89 - -
Vra9g0672 341 Gene3D - 174 240 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0672 Vra-Chr9 7657797 7660379 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0672 176 274 SBP-box Gene Family AT2G42200 65.347 4.53e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vra9g0672 SBP 3.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0672 - - pvu:PHAVU_010G056200g 480.33