Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0666 ATGGCACCTTCAACACTGTCTTTCGCTCTTCTCCTTTCTCTCATATTCTTCCATAATTTCCATCTTTCGTCTTCTTTATCTCTTTCCGTCGAGAACTTCAAAGAAGATGTCATAGTGTCATCACCGGAAAAAACATTCACTGCAGGCTTTTACGCCGTCGGACAAAACGCTTTCTGCTTCGCAATATGGTACACGCGCTCCCCGGACACCGTCGTTTGGATGGCCAACCGGGACCGTCCGCTAAACGGAAAACGCTCCACTCTATCCCTTCTCACCACCGGTAACCTCGTACTCACCGACGCTGGCCAGTTCCAAGTGTGGTCCACCAACACCGCCGCCGAATCCAACCAAGTCCAGTTGCGTTTGTACGACAACGGGAACCTCGTACTCCTCGAAAGCCGGAACAGTTCTTCTGAAGTTGTGATATGGCAGAGCTTCGATTTCCCAACCGACACGCTTCTTCCTGGTCAACCTCTGACTAAGAGTGGCAGCTTGGTTTCCTCGAGAAGCGGGAGCAACTACTCCTCCGGTTTCTACAGGCTCTTCTTCGACTCCGAGAATGTTCTTCGCATCATGTACCAGGGTCCTCAAGTTTCCAGCGTCTATTGGCCGGACCCTTGGCTTCAGAACAACAACTTCGGGAACGGTGGCGCCGGAAATGGCAGATCCACTTACAACGATAGCAGGGTCGCTGTGCTTGATGATTTGGGGTACCTGGTTTCTTCCGATAACTTCACTTTCAGAACCATTGATTACGGCACGGTGCTGCAACGGAGGTTGACTCTGGATCACGACGGTAGTGCGAGGGTGTACAGCAAGAAGGATGGGGAAGAGAAGTGGACAATGGTGGGGGAATTTCGCTCACATCCGTGCTACGCTCATGGCATTTGTGGGGCTAACAGTTATTGCAGATACGACCCTCCCAGTGGTAGAAAGTGTTCGTGCCTCCCAGGTCATTCTTGGGTTGATAGAAAAGACTGGTCTCAAGGTTGCAAACCAACTTTCGAGCATTTGTGCAGCAGCAACAACAGAACCAAGAACGAGTCTCGCTTCTTGCGCATACCTGATGTTGATTTCTACGGATACGACTATGGCTACTTTGGAAATTACACCTATCAACAGTGTGAGAATCTCTGCTCGGAGATGTGCGAATGCAGAGGGTTTCAGCACAGCTTTTCTGTGGAAAATGCTTTTTTTCAGTGCTACCCAAAGACCCATTTGCGTAATGGGAATAGTCAACCGGGTTTCACGGGATCATTCTTCCTGAAACTTCCTTCATCATCTAGTGATGAATTCGAGAACACCATCCAAAATAATGGCTTGGTTTGTGGGGGAGATGGTGAGGAGGCAGAGATGCTTGACAGATTGTATGTCCAAGGGGGAGAAAATGGATCCGTGAAGTTCATGCTATGGTTTGCAAGCGCCTTGGGAGGAGTTGAACTGGTGTGCATCTTTCTGGTGTGGTGTTTCTTGTTTAGGAATAATAGAACGTTACCATCAGGTGCTGAGGGACAAGGGTATGTTCTTGCAGCAGCTGCGGGGTTCAGAAAATTCAGTTACTCTGAGCTGAAACAAGCCAGCAAAGGTTTCAGTGAAGAGATAGGAAGGGGTGCTGGAGGTACTGTGTATAAGGGTGTCTTGGAAGATAATCAAGTGGTGGCAATAAAGCGTCTGCATGAAGTAGCAAACCAGGGAGAAAGCGAGTTTCTGGCTGAGGTAAGCATCATTGGAAGGCTTAACCACATGAACTTGATATGCATGTTGGGGTATTGTGCAGAGGGAAAGCATAGGTTGTTGGTTTATGAGTACATGGAGAATGGTTCTTTGGCTCAGAACCTTTCATCAGATTCAAATGTACTTGGGTGGAGCAAAAGGTATAACATTGCTCTGGGAACAGCAAGGGGTCTGGCCTACTTGCATGAAGAATGCTTGGAGTGGATTTTGCATTGTGACATCAAGCCCCAAAATATACTTCTTGACTCTGATTATAAACCAAAGGTAGGAGATTTTGGCATGTCTAAGCTACTTAACAGGAACAACCTCAACAATTCAAGCTTTTCAAGGATAAGAGGAACAAGAGGTTACATGGCACCTGAATGGGTTTTCAACTTGCCAATCACTTCCAAGGTGGATGTCTACAGCTATGGCATTGTTGTCTTGGAGATGATCACTGGAAGGAGCCCAACAACAGGTGTCCAAATCACAGAGTTAGAAGCAGAATCACCTCATCATGAGAGGTTGGTGACATGGGTGAGGGAGAAAAGGATGAAAGGATCAGAAAATGGATCATCTTGGGTGGATCAAATCGTTGACCCTGCTTTGGGATCAAACTATGACATGAATGAAGTGGAGATATTGGCAACAGTGGCTTTGGAATGTGTGGAGGAAGAGAAAAATGCCAGGCCCAGCATGAGTCGAGTAGCAGAGAAGCTTCAGAGTCATATGCACACCATTGTTGATGTTTTCAACAAAGAATAG 2478 0.4726 MAPSTLSFALLLSLIFFHNFHLSSSLSLSVENFKEDVIVSSPEKTFTAGFYAVGQNAFCFAIWYTRSPDTVVWMANRDRPLNGKRSTLSLLTTGNLVLTDAGQFQVWSTNTAAESNQVQLRLYDNGNLVLLESRNSSSEVVIWQSFDFPTDTLLPGQPLTKSGSLVSSRSGSNYSSGFYRLFFDSENVLRIMYQGPQVSSVYWPDPWLQNNNFGNGGAGNGRSTYNDSRVAVLDDLGYLVSSDNFTFRTIDYGTVLQRRLTLDHDGSARVYSKKDGEEKWTMVGEFRSHPCYAHGICGANSYCRYDPPSGRKCSCLPGHSWVDRKDWSQGCKPTFEHLCSSNNRTKNESRFLRIPDVDFYGYDYGYFGNYTYQQCENLCSEMCECRGFQHSFSVENAFFQCYPKTHLRNGNSQPGFTGSFFLKLPSSSSDEFENTIQNNGLVCGGDGEEAEMLDRLYVQGGENGSVKFMLWFASALGGVELVCIFLVWCFLFRNNRTLPSGAEGQGYVLAAAAGFRKFSYSELKQASKGFSEEIGRGAGGTVYKGVLEDNQVVAIKRLHEVANQGESEFLAEVSIIGRLNHMNLICMLGYCAEGKHRLLVYEYMENGSLAQNLSSDSNVLGWSKRYNIALGTARGLAYLHEECLEWILHCDIKPQNILLDSDYKPKVGDFGMSKLLNRNNLNNSSFSRIRGTRGYMAPEWVFNLPITSKVDVYSYGIVVLEMITGRSPTTGVQITELEAESPHHERLVTWVREKRMKGSENGSSWVDQIVDPALGSNYDMNEVEILATVALECVEEEKNARPSMSRVAEKLQSHMHTIVDVFNKE* 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0666 825 ProSiteProfiles Protein kinase domain profile. 528 819 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0666 825 CDD B_lectin 40 149 IPR001480 -
Vra9g0666 825 SUPERFAMILY Protein kinase-like (PK-like) 513 811 IPR011009 -
Vra9g0666 825 Pfam S-locus glycoprotein domain 254 319 IPR000858 GO:0048544
Vra9g0666 825 PIRSF SRK 1 822 IPR024171 GO:0004674
Vra9g0666 825 Pfam Protein kinase domain 531 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0666 825 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 6 816 - -
Vra9g0666 825 CDD STKc_IRAK 534 812 - -
Vra9g0666 825 ProSitePatterns Protein kinases ATP-binding region signature. 534 556 IPR017441 GO:0005524
Vra9g0666 825 Gene3D Phosphorylase Kinase; domain 1 502 603 - -
Vra9g0666 825 Gene3D - 28 147 IPR036426 -
Vra9g0666 825 SUPERFAMILY alpha-D-mannose-specific plant lectins 60 204 IPR036426 -
Vra9g0666 825 SMART blect_4 29 149 IPR001480 -
Vra9g0666 825 SMART serkin_6 528 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0666 825 ProSiteProfiles Bulb-type lectin domain profile. 24 143 IPR001480 -
Vra9g0666 825 ProSitePatterns Serine/Threonine protein kinases active-site signature. 647 659 IPR008271 GO:0004672|GO:0006468
Vra9g0666 825 Gene3D Transferase(Phosphotransferase) domain 1 604 823 - -
Vra9g0666 825 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 6 816 - -
Vra9g0666 825 Pfam D-mannose binding lectin 70 160 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0666 Vra-Chr9 7575575 7578628 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0666 518 823 Trihelix Transcription Factor Family AT5G38560 43.042 3.15e-70 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vra9g0666 Pkinase 1.2e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0666 - - pvu:PHAVU_010G057000g 1444.1