Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0665 ATGGCAGCTTCAACACTGTGTATCGCTCTTCTCATTCCTCTCATCTTCTTCCATACTTTCCATGCTTCATCTTCCTTCTCCCTCTCCGTAGAGAACTTCAAAGAAGAACTCATACTGTCATCACCCAAACCAACATTCACAGCAGGCTTTTATGCCGTCGGACAAAACGCTTTCTGCTTCGCAGTATGGTACACCCACTCACCCGACACCCTTGTTTGGATCGCCAACCGGGACCAACCCGTTAACGGGAAACGCTCCACGCTCTCCCTTCTCAAAACCGGTAACCTCGTACTCACCGACGCCGGTCAGTTGCAAGTGTGGTCCACTGCCACCTCAACCTCATCCAGACAAGTCCGCTTACATTTGTACGACACCGGCAACCTCGTACTCCTCGAAGATTCCTCCGACAGCGCTGTTTTGTGGCAGAGCTTTGATTTCCCGACCGACACACTTCTTCCAAACCAGCCTCTGAGAGGGAGCACCAACCTCGTTTCCTCGAGAAGCGGGAGCAACCACTCCTCCGGTTTCTACAGGCTCTTCTTCGACTTCGAGAATGTTCTGCGGCTCATGTACCAGGGCCCTCGAGTTTCCAGCGTTTTCTGGCCCTACGCTTGGCTTCAGAGCAACAACTTCGGTAATGGCAACGGCAGATCCACTTTCAACGATAGCAGGGTTGCTGTGCTTGATGAATTGGGTGGCGTGCTTTCTTCCGACAACTACACTTTCAGAACGATCGATTACGGGACGGTGCTTCAACGGAGATTGACCCTCGATCATGACGGTAATGTGAGGGTCTACAGCATGGTAGATGGAGAAGAGAAGTGGATGGTGTCAGGGCTGTTTCGCCCACAACCTTGTTTTATTCATGGCATTTGTGGACCCAATAGTTATTGCACAAATGACCCAACAATTGGCAGAAAGTGTTCCTGCCTTCCAGGTCACAGATGGATTGATAGTCAAGACTGGACTCTAGGTTGCAGACTGAATTTTGATCCTTGGTGCAACACCACTAAGCAAGAGTCTCGTTTCGTGGGCTTAGCTCAGTTTGATTTTTATGGATATGATTATGGCTTCTATCAAAATCACACTTACGAACAATGTGTGAATCAGTGCTTGCAGTTGTGCGAATGCAAAGGGTTTCAGTTCAGTTTTTCGGACCAAGGTGGTTTCGGTAGTCAATGCTACCTGAAGACACAGTTGCTGAATGGGCATTATTCAGTAAGTTTCTCAGGATCATTCTTCCTGAGGCTGCCTTTGTCTCACGACTATGAGAAGCCCATCAGTAATGTTTTGGTTTGCGGGGGAAATAACGGAGGAGTGAAAGAACTAGAAAGACCGTATGTGGAAGAAAAAGAAAATGGATCGGTGAGGTTCATGCTGTGGTTTGCTTGTGCCTTGGGAGGACTTGAGGTTCTGTGCTTCTTTATGGTGTGGTGTTTTCTGTTTAGGAATAATGCTGACAAACAAGCCTATGTTCTTGCTGCGGAAACAGGGTTTAGGAAATTCAGTTATTCTGAATTGAAACAAGCCTCCAAAGGTTTCGGTGAAGAGATTGGAAGGGGTGGTGGAGGTACAGTGTATAAAGGTGTCTTGTCTGATGATCGGGTTGTGGCGATAAAAAGACTACATGAAATAGCAAACCAAGGAGAAAGTGAGTTCCTGGCTGAAGTAAGTATCATTGGAAGACTTAACCACATGAACTTAATTGGCATGTTAGGGTTTTGTGCCGAGGGAAAGTATAGGTTGTTGGTTTATGAGTACATGGAGAATGGTTCTTTAGCTCATAACCTTTCATCGAGTTCAAATGTTCTTGATTGGACCAAGAGGTATAACATTGCTCTGGGAACTGCAAGGGGTCTTGCTTACTTGCATGAAGAATGCTTGGAGTGGATTTTGCATTGTGATATCAAGCCCGAAAATATACTTCTCGACTCTGATTACCAACCTAAGGTAGCAGATTTTGGCTTGTCTAAGCTACTTAACCGGAACAACCTCGACAATTCAACCTTCTCGAGGATAAGAGGAACAAGAGGCTACATGGCACCGGAGTGGCTTTTCAACTTACCAATCACTTCCAAGGTGGATGTCTACAGCTATGGCGTTGTTGTCTTGGAGATGATAACTGGAAGGAGCCCAACAGCAGGTATCCAACTCTCGGAATTAGACGCAGAATCACATAATCATGGGAGGTTAGTGACATGGGTGAGGGAGAAAAGGAAGAAAGGGTCGGAAGTGGGATCATCTTGGGTGGATCAAATAGTTGACCCTGCTTTGGGATCAAAGTATGATAGGAATGAAATGGAGATATTAGCTACGGTGGCTTTGGAATGTGTAGAGGAAGAGAAAGATGTGAGACCCAGCATGAGTCATGTTGTTGAGAGGCTCCAAAGTTACGAGCACAATTCTTGA 2409 0.4641 MAASTLCIALLIPLIFFHTFHASSSFSLSVENFKEELILSSPKPTFTAGFYAVGQNAFCFAVWYTHSPDTLVWIANRDQPVNGKRSTLSLLKTGNLVLTDAGQLQVWSTATSTSSRQVRLHLYDTGNLVLLEDSSDSAVLWQSFDFPTDTLLPNQPLRGSTNLVSSRSGSNHSSGFYRLFFDFENVLRLMYQGPRVSSVFWPYAWLQSNNFGNGNGRSTFNDSRVAVLDELGGVLSSDNYTFRTIDYGTVLQRRLTLDHDGNVRVYSMVDGEEKWMVSGLFRPQPCFIHGICGPNSYCTNDPTIGRKCSCLPGHRWIDSQDWTLGCRLNFDPWCNTTKQESRFVGLAQFDFYGYDYGFYQNHTYEQCVNQCLQLCECKGFQFSFSDQGGFGSQCYLKTQLLNGHYSVSFSGSFFLRLPLSHDYEKPISNVLVCGGNNGGVKELERPYVEEKENGSVRFMLWFACALGGLEVLCFFMVWCFLFRNNADKQAYVLAAETGFRKFSYSELKQASKGFGEEIGRGGGGTVYKGVLSDDRVVAIKRLHEIANQGESEFLAEVSIIGRLNHMNLIGMLGFCAEGKYRLLVYEYMENGSLAHNLSSSSNVLDWTKRYNIALGTARGLAYLHEECLEWILHCDIKPENILLDSDYQPKVADFGLSKLLNRNNLDNSTFSRIRGTRGYMAPEWLFNLPITSKVDVYSYGVVVLEMITGRSPTAGIQLSELDAESHNHGRLVTWVREKRKKGSEVGSSWVDQIVDPALGSKYDRNEMEILATVALECVEEEKDVRPSMSHVVERLQSYEHNS* 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0665 802 SMART blect_4 29 147 IPR001480 -
Vra9g0665 802 ProSitePatterns Serine/Threonine protein kinases active-site signature. 631 643 IPR008271 GO:0004672|GO:0006468
Vra9g0665 802 ProSiteProfiles Protein kinase domain profile. 512 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0665 802 CDD B_lectin 39 147 IPR001480 -
Vra9g0665 802 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 7 802 - -
Vra9g0665 802 CDD STKc_IRAK 525 796 - -
Vra9g0665 802 Pfam D-mannose binding lectin 70 158 IPR001480 -
Vra9g0665 802 Gene3D - 29 145 IPR036426 -
Vra9g0665 802 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 7 802 - -
Vra9g0665 802 SMART ntp_6 338 417 IPR003609 -
Vra9g0665 802 Pfam S-locus glycoprotein domain 250 314 IPR000858 GO:0048544
Vra9g0665 802 ProSiteProfiles PAN/Apple domain profile. 334 418 IPR003609 -
Vra9g0665 802 Gene3D Phosphorylase Kinase; domain 1 479 587 - -
Vra9g0665 802 Pfam Protein kinase domain 515 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0665 802 SUPERFAMILY alpha-D-mannose-specific plant lectins 68 195 IPR036426 -
Vra9g0665 802 SUPERFAMILY Protein kinase-like (PK-like) 497 796 IPR011009 -
Vra9g0665 802 ProSiteProfiles Bulb-type lectin domain profile. 24 143 IPR001480 -
Vra9g0665 802 Gene3D Transferase(Phosphotransferase) domain 1 588 802 - -
Vra9g0665 802 SMART serkin_6 512 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0665 802 PIRSF SRK 1 802 IPR024171 GO:0004674
Vra9g0665 802 ProSitePatterns Protein kinases ATP-binding region signature. 518 540 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0665 Vra-Chr9 7569087 7572732 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0665 502 799 Trihelix Transcription Factor Family AT5G38560 44.518 1.13e-70 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vra9g0665 Pkinase 2.6e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0665 - - gmx:100808408 1316.6