Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0660 ATGGAACGTAATGCTCCAAACATTCCCCCCTCTGAAACTTCCCATTCTCACCCCAGCAGGGTTCGTCCCAAAAGCAGCGTCCAATTTGATGATAACACCCTCTTTCATGATGACAGCGGCAACGTCATCTATGTCAATGATCCCACCAAGACTAATGAAAAGTATGAGTTTTGTGGGAATGACATCCGAACCAGCAGATACACTCTTCTCAACTTCTTGCCCAAGAATCTGTTCATTCAGTTCCACCGGGTTGCTTATCTCTATTTCCTTGCCATTGCTGCCCTGAATCAGCTTCCTCCACTAGCTGTTTTCGGCCGAACCGTGTCCCTTTTCCCCCTATTGTTTGTGCTTTGCGTCACTGCTATCAAGGATGCCTACGAGGATTGGCGCAGGCACAGGTCAGATTGCTATGAAAACAATCGTGAGTGTCTGGTTCTTCAATCGGCTCAGTTCCGTTCCAAGAGATGGAAAAATGTGCAGGCTGGTGATGTGATTAAAATCTTAGCCGATGAGATGATTCCTGCTGACATGGTCTTGCTGGGGACAAGCGATCCTAGTGGAGTTGCTTATATTCAAACAATGAATTTGGATGGTGAATCGAATTTGAAGACACGGTTTGCCAAGCAAGAAACACTTTCAGCGTTTTCGCAAGATGTTTGTGCTGTCTCTGGAGTTATTAGATGCGAACCACCTAATCGGAATATCTATGAGTTCACTGCCACCATGGAGTTAAATGGCCATAAGATTCCCCTTAACCAGTCAAACATTGTTCTGCGTGGTTGCATGCTGAAGAACACGGATTGGATAATTGGTGTTGTGGTCTATGCAGGACAGCAAACAAAAGCAATGTTGAACAGTGCAGCTTCCCCTTCCAAGAGAAGCAAACTGGAAAGTTACATGAATAGAGAAACTTTGTGGTTGTCAGTTTTTCTTTTTATCATGTGCGCAGTTGTTTCCCTAGGGATGGGTCTCTGGCTGGTACGCCACGAGCATGAGCTTGATACCTTGCCTTACTACAGAAAAAAATTCTTCAACAAAGGGCCAAATGAGGGAAGGAAATACAGGTACTATGGGATACCAATGGAAACTTTCTTCTCCTTTTTGAGCTCCATTATTGTGTTTCAGATAATGATACCAATATCTCTATATATCACAATGGAGTTAGTTCGATTGGGTCAGTCATACTTCATGATAGAGGACAAGGATATGTACGATTCTAAATCTGGATCAAGGTTCCAGTGTAGATCATTAAATATAAATGAAGATTTGGGTCAAATACGCTACGTGTTTTCTGACAAGACAGGAACTCTAACAGAAAACAAAATGGAGTTTCAGAGAGCCAGTATTCATGGAAAGAGCTACGGGAGCTCCTTGCATACAGATGATGAAAGTACAGAAGCAGCAGCCAATAACAGTAAACGAAAATGGAAACTCAAATCTGAAACTCCTGTTGATTCTGAACTAATGGCATTGTTGCGGAAAGACTCTAATTTAGATGAAAGAATTGCTGCTCATGAGTTTTTCCTCACATTGGCTGCTTGTAATACTGTGATCCCCATTATCAGTAGTGGTAAAGTTTCCAGTTGTGGTAAAGATGAATCAAATCATGAAATAGAAGGTATTGATTACCAGGGAGAGTCTCCTGATGAACAAGCTCTAGTTTCAGCTGCATCTGCGTATGGATATACTCTATTTGAGAGAACATCTGGAAATGTTGTTCTTGATGTCAATGGTGAGAAACTCAGGTTGGATGTATTGGGCCTGCATGAGTTTGATAGTGTGCGAAAGAGGATGTCAGTTATTCTCCGGTTTCCTGATAATGTTGTTAAGGTGTTGGTTAAAGGCGCTGACAGTTCAATGTTTAGCATTTTAGCTCCTGACACTGAAGGAAACAACGGAATACAGCATGAAACTCAGAGTCATTTAAGTGAATATTCTATGGAAGGTTTACGAACTCTTGTAGTTGGCTCCAGGGATCTTTCAGATGCTGAATTTGAGGAGTGGCAAAAGATGTATGAAGATGCAAGCACTTCATTGACTGATCGAGCTGCAAAACTACGTCAAACAGCGGCTCTGATAGAATGCAACCTAAAGCTTCTCGGAGCAACTGGAATTGAGGACAAGCTGCAGGAGGGTGTGCCAGAAGCCATTGAGTCCATGCGGCAAGCTGGAATCAAGGTCTGGGTTCTTACTGGTGATAAGCAGGAGACTGCAATTTCAATTGGTCTTTCTTGTAAACTTCTGAGTAGAGACATGCAGAAGATCATTATAAATGGCACTTCAGAGGTTGAGTGCAGAAAGCTCTTGACTGATGCTATAGCAAAGTATGGAGTGAAATCTTCAAGTAGAGAACATCAGAATCTGAAGTGCAAAACTGATTCTAGACTTGGTTGCCCTGATATTCACGATAATACAAAATCATTGGGCTTGCCCAAGTCAAATGCAGGGAAAAAAGAAGGAACTACTGCTCCATTGGCACTCATAATTGATGGAACCAGTTTAGTTTATATTTTGGAGAAGGAACTGGAGTCAGAGCTTTTCAAACTTGCAACTTCCTGTAGCGTTGTGCTATGCTGCCGTGTTGCACCCTTGCAGAAAGCAGGAATTGTTGATCTGATAAAAAGCCGCACTGATGATCTGACATTAGCTATTGGTGATGGGGCAAATGATGTGTCGATGATCCAAATGGCAGATGTTGGTGTTGGAATATGTGGGCAGGAAGGGCGCCAAGCCGTGATGGCATCAGATTTTGCCATGGCACAATTCCAGTTCTTGAAAAAATTGCTTCTGGTTCACGGACACTGGAATTATCAGCGTGTTGGTTATCTTGTTCTGTACAACTTTTACCGCAATGCTGTCTTTGTCTTGATGCTATTCTGGTATATATTATGCACTGCTTTTTCTACAACTTCTGCATTGACAGAGTGGAGTAGTGTATTTTATTCTGTTATATACACATCTATCCCCACTATCATTATTGGTGTGATGGACAAAGACTTGAGTCATAGTACACTCTTGCTGTATCCAAAATTATATGGTACAGGTCACAGGCATGAGGCTTACAATTTGCAATTATTTTGGATTACAATGATTGACACGTTATGGCAGAGTCTTGCTCTCTTCTACATTCCCGTATTCATCTATAAGGACAGCACAATTGATATATGGAGCATGGGCAGTTTATGGACAATTTCAGTTGTTATCCTTGTAAATGTACACCTGGCTATGGACATTAACCAGTGGGCACTGGTTAGTCATGTTGCCGTATGGGGATCAATAATCATTACATATGGCTGCGTGGTGATATTGGATTCTATACCTGTCTTTCCCAATTACGGGACTATTTATCATTTGGCAAGTTCCCCTACATATTGGATGACAATTTTTCTTATAATAATCGTGGCATTGCTACCTCGCTTTTCTTGCAAAGCTTTTTATCAAGCCTTTTGTCCTTCAGATATCCAGATAGCCAGAGAAGCTGAGACAATGATAAAACAGCATGGTAATTTGCAACCAAAGTGTCCAGTTTCCAAATAA 3537 0.4173 MERNAPNIPPSETSHSHPSRVRPKSSVQFDDNTLFHDDSGNVIYVNDPTKTNEKYEFCGNDIRTSRYTLLNFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAIKDAYEDWRRHRSDCYENNRECLVLQSAQFRSKRWKNVQAGDVIKILADEMIPADMVLLGTSDPSGVAYIQTMNLDGESNLKTRFAKQETLSAFSQDVCAVSGVIRCEPPNRNIYEFTATMELNGHKIPLNQSNIVLRGCMLKNTDWIIGVVVYAGQQTKAMLNSAASPSKRSKLESYMNRETLWLSVFLFIMCAVVSLGMGLWLVRHEHELDTLPYYRKKFFNKGPNEGRKYRYYGIPMETFFSFLSSIIVFQIMIPISLYITMELVRLGQSYFMIEDKDMYDSKSGSRFQCRSLNINEDLGQIRYVFSDKTGTLTENKMEFQRASIHGKSYGSSLHTDDESTEAAANNSKRKWKLKSETPVDSELMALLRKDSNLDERIAAHEFFLTLAACNTVIPIISSGKVSSCGKDESNHEIEGIDYQGESPDEQALVSAASAYGYTLFERTSGNVVLDVNGEKLRLDVLGLHEFDSVRKRMSVILRFPDNVVKVLVKGADSSMFSILAPDTEGNNGIQHETQSHLSEYSMEGLRTLVVGSRDLSDAEFEEWQKMYEDASTSLTDRAAKLRQTAALIECNLKLLGATGIEDKLQEGVPEAIESMRQAGIKVWVLTGDKQETAISIGLSCKLLSRDMQKIIINGTSEVECRKLLTDAIAKYGVKSSSREHQNLKCKTDSRLGCPDIHDNTKSLGLPKSNAGKKEGTTAPLALIIDGTSLVYILEKELESELFKLATSCSVVLCCRVAPLQKAGIVDLIKSRTDDLTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMAQFQFLKKLLLVHGHWNYQRVGYLVLYNFYRNAVFVLMLFWYILCTAFSTTSALTEWSSVFYSVIYTSIPTIIIGVMDKDLSHSTLLLYPKLYGTGHRHEAYNLQLFWITMIDTLWQSLALFYIPVFIYKDSTIDIWSMGSLWTISVVILVNVHLAMDINQWALVSHVAVWGSIIITYGCVVILDSIPVFPNYGTIYHLASSPTYWMTIFLIIIVALLPRFSCKAFYQAFCPSDIQIAREAETMIKQHGNLQPKCPVSK* 1179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0660 1178 Gene3D - 696 924 IPR023214 -
Vra9g0660 1178 CDD P-type_ATPase_APLT_Dnf-like 59 1044 - -
Vra9g0660 1178 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 38 1173 - -
Vra9g0660 1178 SUPERFAMILY Calcium ATPase, transduction domain A 140 282 IPR008250 -
Vra9g0660 1178 Gene3D - 413 426 - -
Vra9g0660 1178 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 436 713 IPR023299 GO:0000166
Vra9g0660 1178 ProSitePatterns E1-E2 ATPases phosphorylation site. 432 438 IPR018303 -
Vra9g0660 1178 SUPERFAMILY HAD-like 417 929 IPR036412 -
Vra9g0660 1178 SUPERFAMILY Calcium ATPase, transmembrane domain M 57 1150 IPR023298 -
Vra9g0660 1178 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 363 454 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra9g0660 1178 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 854 970 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra9g0660 1178 Gene3D - 120 286 - -
Vra9g0660 1178 SFLD C1.7: P-type atpase like 414 935 - -
Vra9g0660 1178 MobiDBLite consensus disorder prediction 7 25 - -
Vra9g0660 1178 MobiDBLite consensus disorder prediction 1 25 - -
Vra9g0660 1178 Gene3D - 543 676 IPR023299 GO:0000166
Vra9g0660 1178 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 57 1159 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Vra9g0660 1178 MobiDBLite consensus disorder prediction 453 474 - -
Vra9g0660 1178 Pfam Phospholipid-translocating ATPase N-terminal 43 108 IPR032631 -
Vra9g0660 1178 Pfam Cation transport ATPase (P-type) 537 621 - -
Vra9g0660 1178 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 38 1173 - -
Vra9g0660 1178 Gene3D - 427 439 IPR023214 -
Vra9g0660 1178 SFLD p-type atpase 414 935 IPR044492 -
Vra9g0660 1178 Pfam E1-E2 ATPase 141 388 - -
Vra9g0660 1178 PRINTS P-type cation-transporting ATPase superfamily signature 430 444 - -
Vra9g0660 1178 PRINTS P-type cation-transporting ATPase superfamily signature 884 903 - -
Vra9g0660 1178 Gene3D - 440 476 IPR023299 GO:0000166
Vra9g0660 1178 Pfam Phospholipid-translocating P-type ATPase C-terminal 912 1152 IPR032630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0660 Vra-Chr9 7532592 7538439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0660 37 1176 Primary Pumps ATPases AT5G04930 56.316 0.0 1324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0660 K14802 - gmx:100788740 2050.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0630 4 11790832 11798597 Vra9g0660 9 7532592 7538439 PCT