Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0659 ATGGCTTCTCTGCTCCCTCCAACTCCAACTGCTACTTCCACGCTCAAACACAGCCAAATGGCCTCTTCCATGAAGCTCACCACTCCAAACAATGCTTATTTCTTGCAAAACTCAAACCACCGTTTGAAGAGCAACTCTACAAAGTGCCATGCAGTGTTTGGTGATGTGGCCAAAGGGTTGGTGGAGAACAGTGTTGGCATGGACCAGTTTCAAAGTATCCAATCAGGAATAGTGCAGTTTGAAAGAGTGACTGAAGGGTTATCTGACCTGCAGAGGTGGGGGGTTCTCGTGTTTGGTGGGTTGACTTGGATTTACTTGACTGCGAGGCCAGGTGTGCTTGTTGGTGCCATTGATGCATACCTTTTGGCCCCTCTTCAACTGGGGTTGGACAATTTGGTTGGAAGGAGGAACTTGAAGAGGAGTGACTTTGTGGTTGGAGAAAAGCTTGGTGAAGGGTCTTTTGGTGTTGTCTATTCGGGTGTTCTGGTTCCGAAGAATGGGAATGGGAATAATGGGAGTGTTAATGTGGTGCAGAAGAGGGGGAGAGGCAAGACAACGCAGGTGGAACCCAAGTCTAAGGATAAAGTCATTCTTAAAAAGGTTAAGGTCGAAATTCAAGGCGCTGCGGAGTTTGGTGATTATGAGGAGTGGTTCAATTACAGGCTATCTAGAGCAGCTCCCGAAACATGTGCTGACTTCCTTGGAAGTTTTGTAGCTGATAAAACAAATTCACAGTTTACAAAAGGTGGAAAATGGCTTGTTTGGAAGTTTGAGGGGGATCGCACTCTTGCTGATTACATGAAGGATCGAAACTTTCCTTCAAACTTGGAATCTGTGATGTTTGGACGTGTTCTGCAAGGTGTTGACTCTTCAAAACGGAATGCATTGATCATCAAACAAATAATGCGCCAGATCATTACATCTCTGAGGAAAATTCATGATAATGGCATTGTTCACAGGGATGTAAAGCCAGCCAACTTAGTGGTTACGAAACGAGGGCAGATTAAACTCATTGATTTTGGTGCAGCAACAGACTTGCGGATTGGAAAGAATTATGTTCCCAACCGTACCCTTTTCGATCCTGACTATTGCCCCCCAGAATTATATGTTCTCCCAGAAGAAACACCAAGTCCACCACCAGAACCAATTGCTGCTTTCCTTTCTCCAATCCTTTGGCAGTTAAACAGCCCTGATTTGTTTGATACGTATTCAGCTGGGATTGTACTTCTTCAAATGGCAATACCATCCTTAAGGTCTTCTGCTTCTTTGAAGAATTTCAACTTGGAACTAAAAAACTGTGGATATGATCTGAAAAAATGGAGGGACTATACTCGCAGCAGGCCTGACTTCCAAATTCTAGATGGTGAATCTGGTAGAGGGTGGGACTTAGCGACAAGGCTTGTATCTGAGAGAGGTTCCCTAAGAAGAGGACGTTTATCTGCCGCTGCAGCTCTGAGACATCCTTATTTTCTTCTGGGTGGTGATCAGGCAGCTGCAGTACTTTCAAAACTAAGCTTAAGCAGAAAGTGA 1530 0.4471 MASLLPPTPTATSTLKHSQMASSMKLTTPNNAYFLQNSNHRLKSNSTKCHAVFGDVAKGLVENSVGMDQFQSIQSGIVQFERVTEGLSDLQRWGVLVFGGLTWIYLTARPGVLVGAIDAYLLAPLQLGLDNLVGRRNLKRSDFVVGEKLGEGSFGVVYSGVLVPKNGNGNNGSVNVVQKRGRGKTTQVEPKSKDKVILKKVKVEIQGAAEFGDYEEWFNYRLSRAAPETCADFLGSFVADKTNSQFTKGGKWLVWKFEGDRTLADYMKDRNFPSNLESVMFGRVLQGVDSSKRNALIIKQIMRQIITSLRKIHDNGIVHRDVKPANLVVTKRGQIKLIDFGAATDLRIGKNYVPNRTLFDPDYCPPELYVLPEETPSPPPEPIAAFLSPILWQLNSPDLFDTYSAGIVLLQMAIPSLRSSASLKNFNLELKNCGYDLKKWRDYTRSRPDFQILDGESGRGWDLATRLVSERGSLRRGRLSAAAALRHPYFLLGGDQAAAVLSKLSLSRK* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0659 509 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC 1 507 - -
Vra9g0659 509 Pfam Protein kinase domain 297 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0659 509 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 1 507 IPR044803 GO:0004674|GO:0009579
Vra9g0659 509 SMART serkin_6 143 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0659 509 Gene3D Phosphorylase Kinase; domain 1 131 257 - -
Vra9g0659 509 SUPERFAMILY Protein kinase-like (PK-like) 139 491 IPR011009 -
Vra9g0659 509 ProSitePatterns Serine/Threonine protein kinases active-site signature. 317 329 IPR008271 GO:0004672|GO:0006468
Vra9g0659 509 ProSiteProfiles Protein kinase domain profile. 143 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0659 509 Gene3D Transferase(Phosphotransferase) domain 1 288 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0659 Vra-Chr9 7528603 7532090 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0659 167 344 MAP Kinase Kinase Gene Family AT4G29810 25.698 3.79e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Vra9g0659 Pkinase 2.9e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0659 - - gmx:100788727 795.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0659 9 7528603 7532090 Vra4g0626 4 11724638 11731023 PCT