Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0644 ATGGGAGGCGAAGGAAGGGCGGCGATGAAGAAGAAGAAGAACGCAAAATCTGGGGGTTTCGAGTCACTGGGTCTGAGTCCCAATGTGTTCAAGGGAATCAAGCGCAAAGGGTACAAAGTTCCCACCCCCATTCAGCGCAAGACCATGCCCCTCATCCTCTCTGGCTCGGACGTTGTTGCCATGGCTCGCACCGGCTCCGGTAAAACGGCTGCGTTTCTCGTCCCCATGATTCAGCGCCTCAACCAGCACATCCCTCAGTCTGGAGTCAGAGCCCTGATTCTGTCTCCCACTAGGGACCTCGCCCTTCAGACTCTCAAGTTCACCAAAGAGCTTGCCCACTTCACAGACCTTCGTATCAGTTTGTTGGTTGGCGGCGATAGCATGGAGAGTCAGTTTGAGGAATTGGCTCAGAGTCCTGACATTATAATTGCCACTCCTGGTAGGCTCATGCATCATTTGTCGGAAGTTGATGACATGTCCTTGCGCAGCGTCGAATACGTTGTTTTCGACGAGGCCGATTGTTTGTTTGGCATGGGTTTTGCCGAGCAGTTGCATAAGATTCTTGCTCAGCTCGGGGAGATTCGCCAGACCTTGCTTTTCAGTGCCACATTACCCAGTGCTCTTGCTGAATTTGCAAAGGCTGGTCTGAGAGACCCTCAGCTTGTTCGCCTCGACCTGGAGACCAAGATCAGCCCTGATTTGAAGCTCGCCTTCTTCACCTTGAGGCAGGAGGAGAAGTACCCCGCCCTGCTGTACTTGATCAGGGAACATATTGGTTCTGATGAGCAGACATTGATTTTTGTGTCCACCAAACATCATGTAGAGTTTCTCAATGTCTTGTTTCGCCAAGAAGGTATTGAGCCGTCTGTGTGTTATGGTGACATGGATCAGGATGCTCGAAAAATCCATGTATCCAGGTTTAGGTCTAGGAAGACCATGTTGTTGATTGTCACCGACGTTGCNGCTNNTGGCATCGACATTCCATTGCTTGATAATGTTATCAATTGGGACTTCCCNCCNAAGCCTAAAATATTTGTCCATCGAGTTGGAAGGGCTGCAAGGGCTGGTCGGACTGGTACCGCATATTCTTTTGTGACTCCTGAGGATATGGCCTACCTCTTGGATCTTCATTTGTTTCTTTCAAAACCCATCAAACCTGCTCCCACTGAAGAAGAACTCTTGCAGGATATGGATGGTGTAATGTCTAGATGTGACCAGGCAATGGCAAATAGAGAAACCATTTATGGTCGTTTCCCACAAAAAGTCATTGACCTTTTTTCAGACAGAGTCAGGGAAGTTATGGATACTTCTGCAGAACTGGAATTGTTGCAGAGGACCTGTAAAAATGCATTTCGTTTATATTCAAAAACAAAACCCTTACCTGCTAAGGAGTCCATCAGAAGAGTAAAGGATTTGCCTCGGGAAGGGCTGCATCCAATGTTCATGAAGGTGTTNGAAACGGGNGAGTTAACAGCNCTTGCATTTTCTGAGCATTTGAAGAAGTTTAGGCCAAAACAAACCATTTTGGAAGCCGAAGGCGAAGCAGCTAAATCAAAGCATCAACAGGGCTCTTCCGGGCAATGGGGCGATGTGATGAAAAGGAAAAGAGCCATTCATGAGAATATTATAAATTTGGTCCACGAACAACAGCAATCTAAGGATAATATGGAAAAGGAGGAAATCGAATCAGAACTCAATCCTTCCATGGAGAAAGGAAGAAAAGCACGTGGTTCTAAGAGAAAGCCCCAAAGTTTCAAGGATGAAGATCACTATATAAGTTCAATACCAAAAAATCAACATATGGAGGCTGGCCTTACAGTAAAAGCCAATGAAGACTTTGCTTCAAATAGATTGGACTCCGCTGTCCTTGATCTAGTCGCAGATGATGGTGCTGGTATTCACAAACAAAGATCTATGTATCACTGGGATAAGAGGAGTAAAAAGTACATCAAGTTAAACAATGGTGATCGTGTTGCTGCAAACGGAAAGATAAAAACAGAGAGTGGTGCAAAAACGAAGGCCACCAAGACTGGTTTGTATAAGAAGTGGAAAGAACGTTCACATGGTAAGATATCACTTAGAGGGACAAACGACGGTGATCCTCAGGAATCAACAAGTNTGGCAGGATCTTACCAAAGAGGTCGTAGGAATTTTAGAGGCAGCAAGAAGCAGCATTCAATGCCCAATGCTCATGTGCGTTCAGAAATCAAAGATATGGATCAAATTCGAAAGGAAAGGCAGCAAAAGGCCAACAGGACTTCTTATATCAAAAGCAAGTCGAGGAAGGTTAAAAAGTTTGGTAAAAATGGTAAAAGAAGGAAAGGCAAATAG 2331 0.4539 MGGEGRAAMKKKKNAKSGGFESLGLSPNVFKGIKRKGYKVPTPIQRKTMPLILSGSDVVAMARTGSGKTAAFLVPMIQRLNQHIPQSGVRALILSPTRDLALQTLKFTKELAHFTDLRISLLVGGDSMESQFEELAQSPDIIIATPGRLMHHLSEVDDMSLRSVEYVVFDEADCLFGMGFAEQLHKILAQLGEIRQTLLFSATLPSALAEFAKAGLRDPQLVRLDLETKISPDLKLAFFTLRQEEKYPALLYLIREHIGSDEQTLIFVSTKHHVEFLNVLFRQEGIEPSVCYGDMDQDARKIHVSRFRSRKTMLLIVTDVAAXGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAYSFVTPEDMAYLLDLHLFLSKPIKPAPTEEELLQDMDGVMSRCDQAMANRETIYGRFPQKVIDLFSDRVREVMDTSAELELLQRTCKNAFRLYSKTKPLPAKESIRRVKDLPREGLHPMFMKVXETGELTALAFSEHLKKFRPKQTILEAEGEAAKSKHQQGSSGQWGDVMKRKRAIHENIINLVHEQQQSKDNMEKEEIESELNPSMEKGRKARGSKRKPQSFKDEDHYISSIPKNQHMEAGLTVKANEDFASNRLDSAVLDLVADDGAGIHKQRSMYHWDKRSKKYIKLNNGDRVAANGKIKTESGAKTKATKTGLYKKWKERSHGKISLRGTNDGDPQESTSXAGSYQRGRRNFRGSKKQHSMPNAHVRSEIKDMDQIRKERQQKANRTSYIKSKSRKVKKFGKNGKRRKGK* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0644 776 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 18 46 IPR014014 GO:0003724
Vra9g0644 776 Gene3D - 237 461 IPR027417 -
Vra9g0644 776 MobiDBLite consensus disorder prediction 728 752 - -
Vra9g0644 776 MobiDBLite consensus disorder prediction 697 712 - -
Vra9g0644 776 CDD DEADc_DDX54 18 223 - -
Vra9g0644 776 Gene3D - 4 225 IPR027417 -
Vra9g0644 776 Pfam Helicase conserved C-terminal domain 246 356 IPR001650 -
Vra9g0644 776 SMART helicmild6 275 356 IPR001650 -
Vra9g0644 776 MobiDBLite consensus disorder prediction 755 776 - -
Vra9g0644 776 CDD SF2_C_DEAD 244 365 - -
Vra9g0644 776 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 374 IPR027417 -
Vra9g0644 776 SMART DBP10CT_2 624 686 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Vra9g0644 776 SMART ultradead3 37 244 IPR014001 -
Vra9g0644 776 MobiDBLite consensus disorder prediction 550 584 - -
Vra9g0644 776 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 7 773 - -
Vra9g0644 776 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 29 7 773 - -
Vra9g0644 776 MobiDBLite consensus disorder prediction 681 776 - -
Vra9g0644 776 MobiDBLite consensus disorder prediction 551 573 - -
Vra9g0644 776 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 222 IPR014001 -
Vra9g0644 776 Pfam DEAD/DEAH box helicase 42 209 IPR011545 GO:0003676|GO:0005524
Vra9g0644 776 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 246 395 IPR001650 -
Vra9g0644 776 Pfam DBP10CT (NUC160) domain 624 685 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Vra9g0644 776 Coils Coil 539 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0644 Vra-Chr9 7410191 7415331 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0644 1 389 Eukaryotic Initiation Factors Gene Family AT1G72730 30.946 2.16e-57 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0644 K14808 - gmx:100806274 1367.44