Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0625 ATGGCTTTCCCTCCTTACCGAAGATCCCATTTGCGTAGCAACACTTACCATGCTCTTGTTCACCTACTCTCTCACTTTGCTGAGTACAACTCTTCACATGAAACTCCAACCCAATCCTTCAACATTCCCGATGATGGCATTGGTAGAATGGATAGAGTAAACCAAGAAAAGAGGCCCAAGTGCTCTGAAGTTGTTGATTCTGATTTTTTGAGTCCTAAGGATCCTATTAGCCAGAAAGATATAGTGGAGGTTCAGGAGATCATTGAGGGGGTTGGAGAGAAGGATACGGATTTTACTTCCAACAAGATTGTCCTAGATGATATAGAACATATGATGGAAATAGAGGACATGCCTACCCAAGTAAATGGTTTTGATAAGGAGCATGAGCTAATGAATGAGTTTGAACTGGCTATGAAAGGAACTGAAGATCTTATGTGTGATAGTGATTTAATTCCCACGATCACTGAATTTGATGAGAAACATAATGATGGCCGTGAAGTTGGGTTGGTGGACTCTCAAGTAGACATGGAAGAGGGAGAAATTTCTGGAGACTTGGGAAAGGATGGCAATTCATGTGATGTTCGGTCTGCAGATGCTTTAATTTTACCGCAGAAGCAGGTAGATGACCTTCAGGATCCTGTAAATGTAACTAGAAATATGATGTATCCGTCTACGATTGTGAACCAAGAAAAGGAGAAAGATTGTGAGCCTACTTCCTCTGTGGTAAATTCTCTTCAAGATGGCAATGAAAATGGACAAGTGAAGCCTATACCTGGTGAGAACAAAAGAATTCCATGCAGAGTTGAAGTAGAAATTTCTGAAAAAACTTTTGAATGTAAGAAGGAAGATACAATGAAGTTGATGAATGTCAGTAAAAGGAACAAGCGTGGTGGAAAGAAAGACAAAAAAAAGAAGGCGTATAGAATGAAGAGAGCAGAAAAGAACAGAGAGCTAGGTGTTAAAAGTTTGCAGTTTCAGAAGTTTGTACAGAAACCAAAAGCTGTCTCACATTGTCGGCATTATATTATGGGAAGGTGCTATGAGGGTGACAAGTGTCAGTTTTCACATGATGTGGTGCCTCGAACAAAATCCAAGCCATGTGGTCACTTTGCTCATAACTCTTGCATGAAAGGGAATGATTGCCCATTTGATCACGAGCTCTCAAAGTATCCTTGTAACAATATTCTATCCCAAGGCTTTTGTAGAAGAGGTGAATCTTGCTTGTTTTCACACCAGGTATCCAAAGAAGATATCTCTACCCCTTCAAATATGCGCAGACCAGTGTTGTCTACTCTTCAGTCAGGAAATGCAAATTCCAGTACACCAGTTAGCAATAATCATGGCTCTGGTTCTATGCAGCAAAATCTCTTAACTCATTCTTCTGGAATTCATTCTCGGGTCAACGTTCAACATAAGGCAACAGACACTGCACAAAAACAGCCTACACCACCTAAAGGAATCAGTTTCATCAATCTTGCAAAATTCACACCCAGCCCTTCTGCACTTAAACAAGGCACAGTAACAATCAAGGAAAGTCCTTTACAAACAGGGACGCATGAAGAACAACGTGCACTTAACAAAAGTCAAAACAAGGTGGAGATTGCAAAGAAACTGCCATCTGTGACACCTAAAGGAGTAAACTTTCTTTCTTTTGGCAAAGGCTCTGTCTCTGGCTCTAAAACTCATATTCATCCTAATGTGAGTACAGAAAATGGTTTCAATTTGCCTCGGTTACTCAATTTTGGTTTGCCTGAACAGATAAAGAAGGATGTCCACGACAAACCTAGTGACAGGACAAAACAAAGTGTATCACTGTCTGACATATTCTTAAATGAGATTTTAGGAAAAAATCAATCTGTGTCAGAGGGAGTAAAAGCCAAGTTTCCAGATAAAACCTCTGCTACACCAAGTCCTTTTGATTCAATCCAGTCTTCTGAACACCTAAAATCTGATTATCACAAGCATGCATCAAACTCAAGTCAAAAGGCACTCTTGTCAACTTTAGCATTTGCAGCAGAGCATGAATCTGACATTAAGATGAAATGCCCTTCCGTTGATTCATCAGCATGA 2070 0.401 MAFPPYRRSHLRSNTYHALVHLLSHFAEYNSSHETPTQSFNIPDDGIGRMDRVNQEKRPKCSEVVDSDFLSPKDPISQKDIVEVQEIIEGVGEKDTDFTSNKIVLDDIEHMMEIEDMPTQVNGFDKEHELMNEFELAMKGTEDLMCDSDLIPTITEFDEKHNDGREVGLVDSQVDMEEGEISGDLGKDGNSCDVRSADALILPQKQVDDLQDPVNVTRNMMYPSTIVNQEKEKDCEPTSSVVNSLQDGNENGQVKPIPGENKRIPCRVEVEISEKTFECKKEDTMKLMNVSKRNKRGGKKDKKKKAYRMKRAEKNRELGVKSLQFQKFVQKPKAVSHCRHYIMGRCYEGDKCQFSHDVVPRTKSKPCGHFAHNSCMKGNDCPFDHELSKYPCNNILSQGFCRRGESCLFSHQVSKEDISTPSNMRRPVLSTLQSGNANSSTPVSNNHGSGSMQQNLLTHSSGIHSRVNVQHKATDTAQKQPTPPKGISFINLAKFTPSPSALKQGTVTIKESPLQTGTHEEQRALNKSQNKVEIAKKLPSVTPKGVNFLSFGKGSVSGSKTHIHPNVSTENGFNLPRLLNFGLPEQIKKDVHDKPSDRTKQSVSLSDIFLNEILGKNQSVSEGVKAKFPDKTSATPSPFDSIQSSEHLKSDYHKHASNSSQKALLSTLAFAAEHESDIKMKCPSVDSSA* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0625 689 ProSiteProfiles Zinc finger C3H1-type profile. 391 414 IPR000571 GO:0046872
Vra9g0625 689 ProSiteProfiles Zinc finger C3H1-type profile. 361 388 IPR000571 GO:0046872
Vra9g0625 689 Gene3D - 324 390 - -
Vra9g0625 689 ProSiteProfiles Zinc finger C3H1-type profile. 332 359 IPR000571 GO:0046872
Vra9g0625 689 SUPERFAMILY CCCH zinc finger 333 357 IPR036855 GO:0046872
Vra9g0625 689 Pfam CCCH-type zinc finger 337 357 IPR041367 -
Vra9g0625 689 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 159 684 IPR045124 GO:0003723|GO:0045892
Vra9g0625 689 SMART c3hfinal6 361 387 IPR000571 GO:0046872
Vra9g0625 689 SMART c3hfinal6 389 413 IPR000571 GO:0046872
Vra9g0625 689 SMART c3hfinal6 331 358 IPR000571 GO:0046872
Vra9g0625 689 MobiDBLite consensus disorder prediction 627 656 - -
Vra9g0625 689 PANTHER PROTEIN SUPPRESSOR OF SABLE 159 684 - -
Vra9g0625 689 MobiDBLite consensus disorder prediction 432 455 - -
Vra9g0625 689 MobiDBLite consensus disorder prediction 239 259 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vra9g0625 zf-CCCH_4 1.5e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0625 - - vun:114165961 1153.66