Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0623 ATGGAAGCAGCAACCGTAGCAACCTCTTCTCTGAAGAAGCTGAAGCGGAAGCGCGCCCTGGCAAAAAGCGATCCTGAACTCGAACGACTCAACTCGCTTCCGTGGAATTCTTCTCTTCCTCAAAACGACGACGATGACGCTTTCTCCTTGTTCATTGGCACCAACGAACTCGAAGGAGGTTTTCTTTCGCTCGAGGAGATTGATGAGGCGGATTATGGTTTGAGTATTCCTGAGCCTGAAGATAGCAAGAGGAAGGCGAAGAAGAAGAAGTCTATACAGAATGAAGATGTGAAGAAACAACAGCAAGATGGAGTTGATGGTGGGAGTAGTGACGAGGTCGAAGCTCAGTTGGACGAGAGTGTGAAGGCTAAAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACAAAAAAGAAGGATGCTACGGATGGCCAGAAAGTTGAGCAGCCAGATGCTGGTTTAGATGCTAATGTTGAAGATGGTAACGGTGAAGAGGACAATGATGAAGCTGAATTTTATGCATGGAGTGAGTTGAGGCTTCATCCTCTCCTAATGAAAGCAATACGCAAGCATGGCTTCAAGGAACCAACACCGATACAGAAGGCTTGCATTCCAGCTGCTGCTCATCAAGGGAAGGATGTTGTTGGGGCTGCAGAGACCGGATCTGGTAAAACACTGGCATTTGGTTTGCCCATTTTGCAACGCATTTTGGAGGAGAGAGAAAAGGATGCAAACATGGTTGAAGAACCTGGAAAGTATTCTCCTAAAGGAGTTTTGAGGGCTCTTATTATTGCTCCAACTAGAGAACTTGCACTTCAGGTCACTGATCATCTGAAAGCTGTTGCGAAGTATGTTAATGTCAGGGTGACCCCTATAGTTGGGGGGATTTTAGCAGAAAAACAGGAGAGACTTTTAAAAGCAAAGCCTGAGATTGTTGTCGGAACTCCAGGGCGGTTATGGGAACTTATGTCAACTGGAGAAAAACATCTAGTTGAGTTACATTCACTCTCTTTCTTTGTGCTTGATGAGGCCGATCGGATGGTACAAAGTGGTCATTTTAAGGAGTTGCAGTCTATAATTGATATGCTTCCCATGTCCAACATCTCTACTGAAGATAATTCTCAAAATGTACAAAAAGGTTGTGTTACAGTTTCTAGTTACCAAAGAAAGAAAAGACAAACACTTGTTTTTTCAGCGACTGTTGCACTGTCTGCTGATTTTCGCAAGAAGCTAAAACGTGGCTCAGGTCAAAAAAAGCAATCATCAACAGATGGATTGAATTCAATCGAAACTCTTTCTGAGCGTGCAGGAATGAGATCCAATGCAGCAATTATTGATCTTACTAATCCATCTATATTAGCAGCTAAGCTTGAGGAGTCATTTATTGAATGCAGTGAAGAAGATAAAGATGCATATTTGTATTATATTTTGACCGTCCATGGACAAGGTCGCACCATAGTTTTCTGCACGTCTATTGCAGCCTTACGTCATATTTCTTCCATATTACGCATTCTTGGAGTCAATGTTTGGACTCTTCATGCTCAAATGCAGCAGCGAGCACGATTGAAGGCCATTGATCGCTTTCGGGAAAATGAAAATGGCATACTTGTTGCTACAGATGTTGCTGCCAGGGGTCTTGATATTCCTGGTGTTAGAACTGTTGTCCACTATCAGCTTCCACATTCAGCAGAGGTTTATGTTCATAGAAGTGGAAGAACAGCCAGAGCTTCCGCTGAAGGTTGTAGCATTGCTTTAATATCACCAAGAGATACGTCCAAGTTTGCTTCACTGTGCAAATCATTTTCTAAGGATAACTTTCAGCGATTTCCTTTAGAGAACTCTTACATGCCAGAGGTCCTAAAAAGACTGTCTCTTGCACGACAAATAGACAAGATAACAAGGAAGGATTCCCAGGTAAAGGCTGAGAAAAACTGGTTTGATCGGAATGCTAGCTCAGTTGAATTAGTTACTGAAAATTATGACAGTGAAGAGGAGCAAGTGAACAAACATAAGCAAATAAAGGCCAGCTCTAGACAATTGAAGAAATTGCAGGAGGAGCTCAATATGCTGATTTCTCGCCCATTACAATCAAAGTCATTTTCACATCGGTATTTAGCAGGGTCTGGTGTCACACCCCTCATGCAGGAGCAATTGCAACAGTTAGCAAGGCAAAAACTAAGTGATCACCAGGGTTCTAGTCTAGGCAAAAAGGGAAAATTGGTTGTGATTGGTCAAGATTGCATGGATGCACTTCAAGCTCTTCGAAGTGCTGGTGAAGAGGTCCGAATGGATATCAAGGATTTGGCCGGAAAACAGAGAAATATAGAGAATTTAAAAAGAAAGCGAAAAGAGGAGAAAAAACGTTTGCGTGATCAGCGTAGAAAGCAGAAGAAAAAGCTAAAATACGGGGACGAATAG 2418 0.4256 MEAATVATSSLKKLKRKRALAKSDPELERLNSLPWNSSLPQNDDDDAFSLFIGTNELEGGFLSLEEIDEADYGLSIPEPEDSKRKAKKKKSIQNEDVKKQQQDGVDGGSSDEVEAQLDESVKAKEKKKKKKKKKKTKKKDATDGQKVEQPDAGLDANVEDGNGEEDNDEAEFYAWSELRLHPLLMKAIRKHGFKEPTPIQKACIPAAAHQGKDVVGAAETGSGKTLAFGLPILQRILEEREKDANMVEEPGKYSPKGVLRALIIAPTRELALQVTDHLKAVAKYVNVRVTPIVGGILAEKQERLLKAKPEIVVGTPGRLWELMSTGEKHLVELHSLSFFVLDEADRMVQSGHFKELQSIIDMLPMSNISTEDNSQNVQKGCVTVSSYQRKKRQTLVFSATVALSADFRKKLKRGSGQKKQSSTDGLNSIETLSERAGMRSNAAIIDLTNPSILAAKLEESFIECSEEDKDAYLYYILTVHGQGRTIVFCTSIAALRHISSILRILGVNVWTLHAQMQQRARLKAIDRFRENENGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALISPRDTSKFASLCKSFSKDNFQRFPLENSYMPEVLKRLSLARQIDKITRKDSQVKAEKNWFDRNASSVELVTENYDSEEEQVNKHKQIKASSRQLKKLQEELNMLISRPLQSKSFSHRYLAGSGVTPLMQEQLQQLARQKLSDHQGSSLGKKGKLVVIGQDCMDALQALRSAGEEVRMDIKDLAGKQRNIENLKRKRKEEKKRLRDQRRKQKKKLKYGDE* 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0623 805 MobiDBLite consensus disorder prediction 125 139 - -
Vra9g0623 805 MobiDBLite consensus disorder prediction 76 102 - -
Vra9g0623 805 MobiDBLite consensus disorder prediction 1 47 - -
Vra9g0623 805 SMART helicmild6 496 577 IPR001650 -
Vra9g0623 805 CDD DEADc_DDX24 184 446 - -
Vra9g0623 805 Gene3D - 454 696 IPR027417 -
Vra9g0623 805 Pfam DEAD/DEAH box helicase 197 402 IPR011545 GO:0003676|GO:0005524
Vra9g0623 805 PANTHER RNA HELICASE 84 725 - -
Vra9g0623 805 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 205 419 IPR014001 -
Vra9g0623 805 Coils Coil 83 103 - -
Vra9g0623 805 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 260 592 IPR027417 -
Vra9g0623 805 CDD SF2_C_DEAD 457 586 - -
Vra9g0623 805 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 173 201 IPR014014 GO:0003724
Vra9g0623 805 SMART ultradead3 192 421 IPR014001 -
Vra9g0623 805 Pfam Helicase conserved C-terminal domain 468 576 IPR001650 -
Vra9g0623 805 Gene3D - 109 414 IPR027417 -
Vra9g0623 805 Coils Coil 653 693 - -
Vra9g0623 805 MobiDBLite consensus disorder prediction 72 167 - -
Vra9g0623 805 Coils Coil 110 130 - -
Vra9g0623 805 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 340 348 IPR000629 -
Vra9g0623 805 MobiDBLite consensus disorder prediction 774 805 - -
Vra9g0623 805 PANTHER ATP-DEPENDENT RNA HELICASE DDX24 84 725 - -
Vra9g0623 805 MobiDBLite consensus disorder prediction 783 797 - -
Vra9g0623 805 Coils Coil 768 799 - -
Vra9g0623 805 MobiDBLite consensus disorder prediction 30 44 - -
Vra9g0623 805 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 456 617 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0623 Vra-Chr9 7165885 7184085 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0623 174 617 Eukaryotic Initiation Factors Gene Family AT5G11200 28.205 4.97e-41 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0623 K14805 - gmx:100806018 1300.8