Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0610 ATGTCTTTCACTGGAACTCTAGACAAATGCAACGCATGCGACAAGACTGTCTATGTGGTTGACTTGTTAACTCTTGAAGGCACTCCTTACCATAAGAACTGCTTCAAATGCAGTCACTGCAAGGGATGTCTCACGATGTCCACATACTCCTCAATGGATGGAGTTCTCTACTGCAAGACACATTTTGAACAACTCTTCAAGGAATCTGGCAATTTCAGCAAGAACTTCGCAAAGTCTGCTGAGAAACAAAATGATATACAGAACAGAACTCCCAGCAAGCTATCTTCCATGTTCAGTGGAACCCTGGACAAATGTGCAGTATGCGCAAAAACAGTCTATCCTCTTGAAAAGGTGACACTGGAAGGGGAATGCTACCACAAGACTTGTTTCAGGTGTGCTCATGGAGGGTGCCCTCTGACACATTCAAGCTATGCTGCCCTTGATGGTGTCCTGTACTGCAGAGTCCACTTTCAACAACTGTTCATGGAGAAAGGGAACTACAGCCATGTACTCCAAGCTGCTGCACACAGGAGGACTGGTTCTTCTACACCTCCCGAGCCTCTATTTGAGGAGCCATCAAATCCACCAGCAGCATCTGAGGAAGCTAAAGTAGTGGAAGATGAAGATAAAAATGAAGAACAAAGTGAAGAAAAAAGTGAAGAAAAAGAAGAAGAAAAAGAAGAAGAAGAAGAAAGCTCTTGA 702 0.4402 MSFTGTLDKCNACDKTVYVVDLLTLEGTPYHKNCFKCSHCKGCLTMSTYSSMDGVLYCKTHFEQLFKESGNFSKNFAKSAEKQNDIQNRTPSKLSSMFSGTLDKCAVCAKTVYPLEKVTLEGECYHKTCFRCAHGGCPLTHSSYAALDGVLYCRVHFQQLFMEKGNYSHVLQAAAHRRTGSSTPPEPLFEEPSNPPAASEEAKVVEDEDKNEEQSEEKSEEKEEEKEEEEESS* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0610 233 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 202 - -
Vra9g0610 233 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 97 130 - -
Vra9g0610 233 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Vra9g0610 233 SMART lim_4 9 61 IPR001781 -
Vra9g0610 233 SMART lim_4 104 156 IPR001781 -
Vra9g0610 233 PANTHER OS06G0237300 PROTEIN 1 202 IPR045268 GO:0051015
Vra9g0610 233 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Vra9g0610 233 Gene3D Cysteine Rich Protein 5 72 - -
Vra9g0610 233 Gene3D Cysteine Rich Protein 101 169 - -
Vra9g0610 233 MobiDBLite consensus disorder prediction 210 233 - -
Vra9g0610 233 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Vra9g0610 233 MobiDBLite consensus disorder prediction 176 233 - -
Vra9g0610 233 ProSiteProfiles LIM domain profile. 103 163 IPR001781 -
Vra9g0610 233 Pfam LIM domain 105 160 IPR001781 -
Vra9g0610 233 Pfam LIM domain 10 65 IPR001781 -
Vra9g0610 233 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Vra9g0610 233 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 131 170 - -
Vra9g0610 233 Coils Coil 197 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0610 Vra-Chr9 6927811 6929683 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Vra9g0610 LIM 4.9e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0610 - K09377 gmx:100800234 373.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0610 9 6927811 6929683 Vra9g0610 9 6927811 6929683 ECH