Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0604 ATGATCTTGCAACTTTATCGGTTATGCAATACATTGTTGATTAAGATGGGAAGGAAACCCTGTTGTGACAAGATGGGTATGAAGAAGGGTCCTTGGACTGCTGAAGAGGATGAGATTCTTGTCAATTATATCAACAAGAATGGTGGCCATGGAAGTTGGCGTTCTCTTCCCAAGTTAGCAGGTCTTCTTCGTTGTGGCAAGAGTTGTAGGCTAAGATGGACCAACTACCTCAGACCAGATATTAAACGTGGTTCCTTCACTTTTGAGGAAGAAAAACTAATCATACAGCTTCATGGTATCCTTGGAAATAGGTGGGCTGCTATAGCCTCTCAGCTACCAGGAAGAACAGACAATGAGATCAAGAACTTATGGAACACCCATTTGAAGAAACGTCTCATTTGCATGGGCCTAGACCCTCAAACCCACCAGCCACTCTCCTCTTCATGCAACCCTGATGGCAAGGCCCATGCAGCATCCACCTCAACCCGCCACATGGCCCAGTGGGAGAGTGCAAGGCTTGAAGCAGAGGCCAGGCTCTCAAGAGAGCCCTATTTGTTCAACAACAACTCCAACAAAACTGACTCTGACTACTTCCTCAGAATGTGGAACTCTGAAGTTGGACAATCTTTTCGTGGTGTGCACAAATCAGACAACAAAGGTAGCTGCCAAAGTCCCATTTCTCTAGGGTCATTGTCTGCTACCACCACCATAGATTTGGCTTCCAACCCTACAAGCATTGTGAAAGAGGATTTGGTGTGGGGTGGTAGCAAGAAAATTGCCTCTGATTCATCAAGCTCTAGTGAACTAGAAGAAGACTCGTGTGACACTTCATTGCAGCTCTTGTTAGACTTTCCTATAAACAATGACATGAGCTTCTTAGAATGA 885 0.452 MILQLYRLCNTLLIKMGRKPCCDKMGMKKGPWTAEEDEILVNYINKNGGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGSFTFEEEKLIIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLICMGLDPQTHQPLSSSCNPDGKAHAASTSTRHMAQWESARLEAEARLSREPYLFNNNSNKTDSDYFLRMWNSEVGQSFRGVHKSDNKGSCQSPISLGSLSATTTIDLASNPTSIVKEDLVWGGSKKIASDSSSSSELEEDSCDTSLQLLLDFPINNDMSFLE* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0604 294 CDD SANT 85 128 IPR001005 -
Vra9g0604 294 Gene3D - 27 83 - -
Vra9g0604 294 SMART sant 28 79 IPR001005 -
Vra9g0604 294 SMART sant 82 130 IPR001005 -
Vra9g0604 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 132 IPR017930 -
Vra9g0604 294 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 261 293 - -
Vra9g0604 294 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 16 239 - -
Vra9g0604 294 ProSiteProfiles Myb-like domain profile. 78 128 IPR001005 -
Vra9g0604 294 SUPERFAMILY Homeodomain-like 25 124 IPR009057 -
Vra9g0604 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 77 IPR017930 -
Vra9g0604 294 ProSiteProfiles Myb-like domain profile. 24 77 IPR001005 -
Vra9g0604 294 CDD SANT 31 77 IPR001005 -
Vra9g0604 294 Pfam Myb-like DNA-binding domain 83 128 IPR001005 -
Vra9g0604 294 Pfam Myb-like DNA-binding domain 29 77 IPR001005 -
Vra9g0604 294 PANTHER PROTEIN ODORANT1-LIKE 261 293 - -
Vra9g0604 294 PANTHER PROTEIN ODORANT1-LIKE 16 239 - -
Vra9g0604 294 Gene3D - 85 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0604 Vra-Chr9 6873964 6877412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0604 16 294 MYB Transcription Factor Family AT3G61250 61.724 4.37e-121 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra9g0604 Myb_DNA-binding 2.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0604 K09422 - gmx:100788528 456.447