Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0593 ATGGATCGAGGGGACCAAATGTTATCTGGCTCTGCATCTTACTACATGCAGAGAGGAATACCTGGTGCTGGAACTCAATCTGAACTGCACAACTCGCCTAATATTAGATCATTGTCTAATCCTAATTTACCATTTCAATCAAGCATTGGTGGTGGTGGTACCATTGGATCCACATTACCATTGGAGTCTTCAGGAATTTCATCTCCATGTGTCAATGTGAGTGTTCCTTCTGGTGCTGTGCCAGGGGAATCTGTCAAAAGGAAGAGAGGAAGGCCTCGAAAATACGGGCCGGACGGAACTGTGTCGTTGGCATTGACTCCAACACCAGCAAGTCATCCTGGAGCCCTGGCACAAGGCCAGAAACGAGGTAGAGGGCGCCCACCAGGATCAGGGAAGAAACAGCAGTTGGCATCTCTTGGTGAACTGATGTCTGGTTCAGCTGGGATGGGATTCACTCCTCATATCATTACCATATCAGTTGGAGAGGACGTTGCCACAAAAATCATGGCATTTTCTCAGCAGGGTCCAAGAGCTATATGTATTTTGTCAGCCAATGGCGCTGTGTCTACTGTGACTCTTCGCCAGCCTTCAACATCAGGTGGCACAGTCACATATGAGGGGCGTTTTGAGATATTGTGCCTGTCAGGCTCTTACCTGGTTGCCGATAGTGGTGGCTCCCGCAATCGAACTGGTGGATTAAGTGTTTCCCTTGCAAGTCCAGATGGTCGTGTCATTGGTGGAGGAGTTGGCGGAGTGCTTGTTGCTGCAAGTCCAGTTCAGGTGATAGTTGGAAGCTTTACATGGGGTGGATCAAAGACAAAGATCAAGAAAAAAGAACCTTCAGAAGTGGCAGAAGTTGCTATCGAGACTGATCATCAGACAGTTCATAATCCAGTTGCAATGAATAGCCTCTCACCAAATCAAAATCTTACTCCAACCTCATCTATAAGTCCATGGCCAGCATCACGATCATTGGATATGCGCAACTCTCATATTGACATTGATTTAATGCGCGGGTGA 1020 0.4735 MDRGDQMLSGSASYYMQRGIPGAGTQSELHNSPNIRSLSNPNLPFQSSIGGGGTIGSTLPLESSGISSPCVNVSVPSGAVPGESVKRKRGRPRKYGPDGTVSLALTPTPASHPGALAQGQKRGRGRPPGSGKKQQLASLGELMSGSAGMGFTPHIITISVGEDVATKIMAFSQQGPRAICILSANGAVSTVTLRQPSTSGGTVTYEGRFEILCLSGSYLVADSGGSRNRTGGLSVSLASPDGRVIGGGVGGVLVAASPVQVIVGSFTWGGSKTKIKKKEPSEVAEVAIETDHQTVHNPVAMNSLSPNQNLTPTSSISPWPASRSLDMRNSHIDIDLMRG* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0593 339 MobiDBLite consensus disorder prediction 72 136 - -
Vra9g0593 339 Pfam Plants and Prokaryotes Conserved (PCC) domain 153 267 IPR005175 -
Vra9g0593 339 MobiDBLite consensus disorder prediction 24 56 - -
Vra9g0593 339 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 315 - -
Vra9g0593 339 Gene3D - 153 296 - -
Vra9g0593 339 MobiDBLite consensus disorder prediction 18 56 - -
Vra9g0593 339 CDD DUF296 152 241 IPR005175 -
Vra9g0593 339 MobiDBLite consensus disorder prediction 303 322 - -
Vra9g0593 339 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 315 IPR039605 GO:0003680
Vra9g0593 339 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Vra9g0593 339 SMART AT_hook_2 121 133 IPR017956 GO:0003677
Vra9g0593 339 SUPERFAMILY AF0104/ALDC/Ptd012-like 151 269 - -
Vra9g0593 339 ProSiteProfiles PPC domain profile profile. 147 289 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0593 Vra-Chr9 6705288 6711050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0593 1 339 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 51.389 1.05e-89 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0593 - - gmx:100799791 590.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0593 9 6705288 6711050 Vra9g0593 9 6705288 6711050 ECH