Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0568 ATGGCTGTGGTGAGTCCTATGCCTGCAACTGCACCACAGATCAATCGTACGAGCAAGCTTCGTGATGTTGGGGTTCCTGGAATCATGACTAGTAGGAGAGAAATTGTGAGTGAGCCCAGTCCAAGTATGGTTAATGATACACTCTATGTTGCTGTGGCAAAAGATGTGAAAGACAGTAAATTAAATCTCATATGGGCAATACAAAATTCTGGAGGAAGGAGAATTTGCATCCTTCATGTTCACGTACCAGCACCTATGATCCCTATGATGGGTGCTAAATTTCCTGCAAGTGCACTGAGAGAACAGGAAGTTCAAGATTATCATGAAAGGGAAAGGCAAAAAATTCCGGAGATTATGGATGCCTATCTTTATATCTGTCAAAGAATGGGGGTGAGGGCAGGTAAAGTATTCATTGAAATGGATTGTGTAGAAAAAGGGATTGTAGAGCTCATCCACCAGTATGGCATACAGAGGCTTGTAATGGGAGCAGCATCTGATAAGAACTATTCTAGGAGAATGATATCCCTCAAATCTAAGAAAGCTATATATGTATCTGAACAAGCTCCAGCTTCTTGTCATATACAGTTTGTCTGCAATGGGTACCTCATACACACAAGGGATTGCAGATTGGATAGAAGGAATGTAGAGGTTGGATCTCCTTCTGTGCTGCAAATAGCAAACTCTGAAGTTGGGCATTCGCCTAACATGGGATCCCCATCCTCAGTGGCAGGACAAAATCGTTGGAGAAAACCAACTAATCCCGGACAAGAGTTATTTCGTAGAGTTAGGACTATCAATGGTGCACTTCGGAAGAGCATCGAATCTGTTTCTTCTTTAGAAGGGTACTTAATTCCTAAGAGAAAGATAGGTAAAGGAGCAAGTTCTGATGAGTTTGATGAGCAATCACGAGGGAGTCCTTCAGTAGTCTCAATGTACTTTGAGAGCTGTTTGGGTGATGCAGAATTGATCCCAGATTTGATTAACAATGGCAGTGAGAATGTATTAGGCTTGTCATTGAATAACTTTTCTCTGGATAACAAGGATCTCCATTCACCATCTCCAAGTGTATTGGATGAAGGAATGGATGATGCTCTCTATGGTCAACTTGAACATGCAATGGCTGAGGCTTGGAATGCTAGGCAAGATGCATATCATGAAACTGTTAGGCGCGTGAAAGCAGAAAAAGAAGCCAAGGATGCTATACGCAAGGCTAAAGCCACTGAAAACCTGTTTCAAGAAGAGCTAAAACTAAGAAAAGAACAAGAGGAAGAAGTACAGAAAGCAAATGAAGAACTTGATAATATGAAGAGCCAGATAAACAAAGTTAACGAGGAACTCCAACTTGCCTTAGACCAGAAATTATCTCTAGAGAATCAAATTGCATCTACTGAACTTGTTGTGAAGGAGTTGGAGCAGAAGAATATATCTGCTGATGAGTTATCTCAAAAGTACAAGGATGAACTGGATGAGTTGCAAATGCAACTTGATAACGCATTGGGAGAGGCTGAGGAGTTAAGGAGAGAACAAGGGGAATCCTCAAGCATGCAACGGCTTCAACCCTTCTCAGAATTCTCCTTTTCAGAGATTAAAGAAGCAACAAGAAACTTCAATCCATCCCTTAAGATTGGACAAGGTGGATATGGAAGTATATTTAAAGGTATCTTACGTCACACTGAGGTGGCTATAAAAATGTTGAGTCCTGACAGTGCCCAAGGTCCAGTGGAGTTTCAACAAGAGGTTGAAATATTGAGCAGGTTGAGGCACCCAAATCTTGTGACACTTATAGGATCCTGCCCAGAATCCTGGACTCTTGTGTATGAGTATTTACCCAATGGAAGCCTTGAAGATCGTCTCAACTGCAAAGATAACACACCTCCATTATCATGGCAAACTCGAATTCGCATAGCTGCAGAACTCTGCTCGGCTCTCATCTTTCTTCAATCAAGTAAACCTCACAGCATAGCACATGGTGACTTAAAGCCAGGCAACATTCTCCTAGATGCAAACCTTGTAAGCAAGCTCAGTGACTTTGGAATCTGTCGTATATTATCTTGTCAAGAGGGTTCAAGTAGCAGTACTACACAGTTTTGGAGGACTGTTCCAAAGGGAACTTTTGTGTATGTGGATCCTGAATTCCTTACTTCTGGTGAACTCACACCAAAGTCAGATGTTTACTCGTTTGGAGTCATTTTATTGAGATTGATCACTGGTAAACCTGCTCTGGGAATAACAAAGGAAGTGCAATATGCATTACATAGTAGAAAGTTGAAATCCATCTTGGATCCATTGGCTGGAGACTGGCCAGTTATGCTAGCTGAAGAGCTGGTTCGCTTGGCTTTGAGGTGTTGTGAGATGAACAGAAAGAACAGACCAGATCTTCATCCAGATGTTTGGAGAATACTAGAACCAATGAGGGCTTCTTGTGGACCCACTCAACTGGGTTCTCAAGGAAAATGCCAACCTCCTCCATATTTTATCTGTCCAATCTCTCTGGAAGTGATGCAAGATCCACAAGTGGCTGCAGATGGTTTTACTTATGAAGCTGAGGCTATACGTGAATGGCTGAAAAGTGGTCGTCACACTTCACCAAGGACAAACTCTAAGTTAGCACATCACAACCTTATTCCCAACCACTCTCTTCGCCATGCAATCCAGGACTGGCTTCAAACTCACTGA 2676 0.4219 MAVVSPMPATAPQINRTSKLRDVGVPGIMTSRREIVSEPSPSMVNDTLYVAVAKDVKDSKLNLIWAIQNSGGRRICILHVHVPAPMIPMMGAKFPASALREQEVQDYHERERQKIPEIMDAYLYICQRMGVRAGKVFIEMDCVEKGIVELIHQYGIQRLVMGAASDKNYSRRMISLKSKKAIYVSEQAPASCHIQFVCNGYLIHTRDCRLDRRNVEVGSPSVLQIANSEVGHSPNMGSPSSVAGQNRWRKPTNPGQELFRRVRTINGALRKSIESVSSLEGYLIPKRKIGKGASSDEFDEQSRGSPSVVSMYFESCLGDAELIPDLINNGSENVLGLSLNNFSLDNKDLHSPSPSVLDEGMDDALYGQLEHAMAEAWNARQDAYHETVRRVKAEKEAKDAIRKAKATENLFQEELKLRKEQEEEVQKANEELDNMKSQINKVNEELQLALDQKLSLENQIASTELVVKELEQKNISADELSQKYKDELDELQMQLDNALGEAEELRREQGESSSMQRLQPFSEFSFSEIKEATRNFNPSLKIGQGGYGSIFKGILRHTEVAIKMLSPDSAQGPVEFQQEVEILSRLRHPNLVTLIGSCPESWTLVYEYLPNGSLEDRLNCKDNTPPLSWQTRIRIAAELCSALIFLQSSKPHSIAHGDLKPGNILLDANLVSKLSDFGICRILSCQEGSSSSTTQFWRTVPKGTFVYVDPEFLTSGELTPKSDVYSFGVILLRLITGKPALGITKEVQYALHSRKLKSILDPLAGDWPVMLAEELVRLALRCCEMNRKNRPDLHPDVWRILEPMRASCGPTQLGSQGKCQPPPYFICPISLEVMQDPQVAADGFTYEAEAIREWLKSGRHTSPRTNSKLAHHNLIPNHSLRHAIQDWLQTH* 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0568 891 CDD STK_N 47 200 - -
Vra9g0568 891 ProSitePatterns Serine/Threonine protein kinases active-site signature. 654 666 IPR008271 GO:0004672|GO:0006468
Vra9g0568 891 MobiDBLite consensus disorder prediction 229 252 - -
Vra9g0568 891 CDD RING-Ubox_WDSUB1_like 825 866 - -
Vra9g0568 891 Pfam U-box domain 822 891 IPR003613 GO:0004842|GO:0016567
Vra9g0568 891 Gene3D HUPs 42 173 IPR014729 -
Vra9g0568 891 ProSitePatterns Protein kinases ATP-binding region signature. 542 563 IPR017441 GO:0005524
Vra9g0568 891 Coils Coil 390 508 - -
Vra9g0568 891 ProSiteProfiles Protein kinase domain profile. 536 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0568 891 Gene3D Phosphorylase Kinase; domain 1 506 608 - -
Vra9g0568 891 ProSiteProfiles U-box domain profile. 820 891 IPR003613 GO:0004842|GO:0016567
Vra9g0568 891 PANTHER U-BOX KINASE FAMILY PROTEIN 15 890 - -
Vra9g0568 891 Gene3D Transferase(Phosphotransferase) domain 1 609 810 - -
Vra9g0568 891 SMART serkin_6 536 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0568 891 PANTHER OS02G0152300 PROTEIN 15 890 - -
Vra9g0568 891 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 68 171 - -
Vra9g0568 891 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 819 891 IPR013083 -
Vra9g0568 891 Pfam Protein kinase domain 540 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0568 891 MobiDBLite consensus disorder prediction 229 253 - -
Vra9g0568 891 SMART Ubox_2 824 887 IPR003613 GO:0004842|GO:0016567
Vra9g0568 891 SUPERFAMILY Protein kinase-like (PK-like) 511 794 IPR011009 -
Vra9g0568 891 SUPERFAMILY RING/U-box 818 891 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0568 Vra-Chr9 6342626 6348151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0568 1 891 U-box Gene Family AT2G45910 49.387 0.0 815
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vra9g0568 Pkinase 1.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0568 - - var:108321203 1660.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0568 9 6342626 6348151 Vra9g0568 9 6342626 6348151 ECH
Vra9g0568 9 6342626 6348151 Vra4g0775 4 14539604 14546890 ECH
Vra4g0775 4 14539604 14546890 Vra9g0568 9 6342626 6348151 PCT