Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0562 ATGTCAAAAAACCAGTCTGGCCATAATAACTCTGCACTAAACCACTCCACCTATAAATCTCTCTCCACCATTACACACTTTACCCTCATTGCACCACACTCACTCTCTTCTCCTTTACATAAACACAACCTCTTTCATCTTCTTTCACTCCTCCATTTTCCTCTCTTGCACCAACCTCACACCAGAAACCTCTGCATCATCAGAAATGCTCCTATTTCGACACACCCTTCCCTGAAAGGTACTGTTTTTACTCATTTTCCAGCCACCCCATCTTCTACAAAACTCCAAGTTTCTTCCTTTTTTGCTGGGCTTTTGAGCATTTTGACTATTCTAGCTTGGGTGGGTTGGTTGGTTGGTTTCTGCAATATGGAAACTTTCACGGCTCTATTGTTGTTAACGGCGATCACGGCGTACTTGATATGGTTCACTTTCATCTCGCGGTCGCTGAAGGGTCCACGTGTCTGGGCCTTATTGGGCAGTCTCCCGGGCCTCATAGACAACTGTGACCGCTTGCATGACTGGATCTGCGACAACCTACGCGCGTGTGGCGGCACTTACCAGACTTGCATCTGTGCAATTCCTTTCCTCGCCAAGAAGCAAGGTCTCGTGACTGTGACATGCGACCCGAGGAACTTGGAGCACATACTGAAGACCCGTTTCGACAATTACCCCAAAGGCCCCACGTGGCATGCTGTCTTTCATGATCTTTTGGGTGATGGGATCTTTAACTCTGACGGTGACACGTGGCTGTTCCAGCGCAAGACTGCAGCGCTGGAATTCACCACCAGGACATTGCGTCAAGCCATGGCTAGATGGGTGAGCGGAGCCATCAGCCGCCTCTGCTTGATCCTGAAGAAAGCTCATGATCGAGCTGAACCCATTGATCTGCAAGACCTAATGCTTCGTCTTACTTTTGACAACATTTGTGGGTTAGCTTTTGGACGAGATCCACAAACATGTGTGTCGGGTTTGCCTGATAACCGTTTTGCAACTGCTTTTGACCGAGCCACCGAAGCCACACTTCAGAGGTTCATTTTGCCAGAGGTGTTGTGGAAAGTGAAGAAATGGCTGCGGCTTGGGTTGGAGGTGAGCCTGAGCCGAAGCCTTGTCCACGTGGACAACCATTTGTCGAATGTCATTGAGAAACGCAAGGTGGAATTGCTGAATCACCAGAAAGATGGGAGTCTTCATGATGACTTGTTGACTAGGTTTATGAGGAAGAAAGAATCGTACACAGACAAGTTTCTACAACAGGTGGCACTGAATTTTATCCTAGCTGGACGCGACACGTCATCGGTAGCTCTTTGCTGGTTTTTCTGGTTGGTGATGCAGAATCCCAAAGTGGAGGAGAAAATTCTGCGTGAAATTTGTACAGTCTTGATGGAGACACGTGGCGATGACATGGCAAAATGGTTGGATGAGCCGTTGGCCTTTGAGGAAGTTGACCGTTTGGTTTATCTCAAGGCAGCATTGTCTGAGACACTGAGGTTGTACCCTTCTGTGCCGGAGGACTCAAAGCATGTGGTGGCCGATGACCTGCTGCCGGACGGCACGTTTGTGCCGGCGGGGTCGTCGGTGACGTATTCCATTTATTCAGCGGGGAGGATGAAGTCCACGTGGGGTGAGGATTGCATGGAGTTTAGACCTGAGAGGTGGTTGTCATCGGATGGGACAAAGTTCATCACGCATGACTCTTTCAAGTTTGTTGCTTTCAATGCTGGTCCAAGAATATGTTTGGGTAAGGATTTGGCTTACCTTCAGATGAAGTCCATTGCTGCCGCGGTGCTGCTCCGGCACCGCCTTGTTCTGGTGTCTGGCCACCTGGTGGAGCAAAAGATGTCACTCACTTTGTTCATGAAAAATGGACTCAAGGTCAATGTCCATGAGAGGGACTTGAGAGGGGTCATTATAAGTATACAAAAAGAAAAGGAGGGAGATGCTGGTTTTAGAAGTAATGAAAGTTAG 1965 0.4855 MSKNQSGHNNSALNHSTYKSLSTITHFTLIAPHSLSSPLHKHNLFHLLSLLHFPLLHQPHTRNLCIIRNAPISTHPSLKGTVFTHFPATPSSTKLQVSSFFAGLLSILTILAWVGWLVGFCNMETFTALLLLTAITAYLIWFTFISRSLKGPRVWALLGSLPGLIDNCDRLHDWICDNLRACGGTYQTCICAIPFLAKKQGLVTVTCDPRNLEHILKTRFDNYPKGPTWHAVFHDLLGDGIFNSDGDTWLFQRKTAALEFTTRTLRQAMARWVSGAISRLCLILKKAHDRAEPIDLQDLMLRLTFDNICGLAFGRDPQTCVSGLPDNRFATAFDRATEATLQRFILPEVLWKVKKWLRLGLEVSLSRSLVHVDNHLSNVIEKRKVELLNHQKDGSLHDDLLTRFMRKKESYTDKFLQQVALNFILAGRDTSSVALCWFFWLVMQNPKVEEKILREICTVLMETRGDDMAKWLDEPLAFEEVDRLVYLKAALSETLRLYPSVPEDSKHVVADDLLPDGTFVPAGSSVTYSIYSAGRMKSTWGEDCMEFRPERWLSSDGTKFITHDSFKFVAFNAGPRICLGKDLAYLQMKSIAAAVLLRHRLVLVSGHLVEQKMSLTLFMKNGLKVNVHERDLRGVIISIQKEKEGDAGFRSNES* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0562 654 PRINTS P450 superfamily signature 426 443 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra9g0562 654 PRINTS P450 superfamily signature 489 500 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra9g0562 654 PRINTS P450 superfamily signature 569 578 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra9g0562 654 PRINTS P450 superfamily signature 578 589 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra9g0562 654 PANTHER CYTOCHROME P450 126 632 - -
Vra9g0562 654 Pfam Cytochrome P450 203 618 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra9g0562 654 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 571 580 IPR017972 GO:0005506|GO:0016705
Vra9g0562 654 Gene3D Cytochrome P450 146 633 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra9g0562 654 SUPERFAMILY Cytochrome P450 149 630 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra9g0562 654 PANTHER CYTOCHROME P450 86A7 126 632 - -
Vra9g0562 654 PRINTS E-class P450 group I signature 415 432 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra9g0562 654 PRINTS E-class P450 group I signature 435 461 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra9g0562 654 PRINTS E-class P450 group I signature 488 506 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra9g0562 654 PRINTS E-class P450 group I signature 568 578 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra9g0562 654 PRINTS E-class P450 group I signature 578 601 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0562 Vra-Chr9 6248403 6251107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0562 123 643 Cytochrome P450 AT2G45970 78.203 0.0 860
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0562 K15398 - gmx:100779986 1005.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0562 9 6248403 6251107 Vra9g0562 9 6248403 6251107 ECH