Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0559 ATGTCCATGGCAGGGCGGTTGCATTTATACGACGGTGTTCGCGAAGAAAATAGTGGTGAAATATTTGGAGGCTCGAACGACGATTCTTTGTGCCGTTTCGAGAGGTTGTTTGCAGAGTTCTTTAGTGAGATCTGTGCGTTTAATTGCGTTTTGCATTATCCTCCAATGCTGTCTGATGGGCAGGACGTGGATTTGTATAGGTTGTTTTTGGTGGTGAGAGGGAAGGGTGGATACGATGCCGTTTGCAAAGGGAAGTTGTGGGATTCGGTTGGGGAGGAGTCTGGGATGGGAGTGAGTGTTGGGTCCTCTGTTGAGTTGGTTTACANTAGGTACTTGAGTGCTTTGGATTCATGGATGAAGAAAGTTGCTGAGAGTAAGGTGTCTCCCGAATTTGGTGTGGTGGATGATAGGGATAAGTTTGGGAGGCGGTTAATGGAGTTGCAGGCTGAGGTGGAAGGGTTGCTTTCCGGTTGTGCGGATGAGAGGGTGGTTTTGGTTGGGGAGGATGTCGAGGGTGGTCTTGATGAAGATGATCACAACTCTGATGGGAGGGAGTTATCCGGTGCTAATGGGGTGAAAAGTAACGGTGACGAAGGAGGTGAACATAAACAATGTGATGATTCGGAGATGCCGGACAATGACATGGATGAGGCGGTTCTTGGAAACTCGGATAAGGGAAATGATATAATGGGAGGGGAGGAAGGGTTTGATGGAGGGAAAATGCCTGAAGAGCAGGCTGTGGATATATCGGATGGGGCTAATAACAATGGGACTGGAGTGGTGAGCGGAGGCAAGAAGTGTGACGACAGTGATGATAAGGGCTTGGTGTTGGATGCATCTGGTGGTAATAGTGATGGTGATAGTTCTGGTCACAAGAGGAAGAGAGAGGGGTCTGTGTTGGGTTCATCTAGTGATGATTGTGATAGTCCTAGTCGTAAGAGAATGCGAGAGTCTGCAATGGATATGCTGAGCTGGGTTACTGGTGTTGCAAAGAATCCTGGTGATCCTGAAGTTGGTTCAATCCCTGAAAAGTCAAAGTGGAAGTCTTATACTAGTCAGGAGGGGTGGAAACAGGTGCTGTTGTTTCGGGAAGCTACGTTTTACAGAAGAGGTTCTGAGCAAAGCAATGAACAACGTAATTGGCAGAATCAGAAGATGCATCCGTGCTTGTATGAAGAACAAGTTGGGACAAACTACAATCTCAGAGACAGGTTGAAATGTGACAAGAAGCTTTTATTTGGCAAATCTGCATCTCTGCGAAGCTCTTCTGATTCATCTGTGGCAACTGAGAACAGAACACCTAATTCTCACGCTGAAGGTCAATCTGAGTTGCTTGATTCCCCAGATGCAAATGCAGGTCTTGACAAATGTGCAACAGTACGCATTCCTTTGGGGACAAATCATCAAGCCGAAATACCAGAATGGACTGGTGTGACTTCTGAAAGTGATTCTAAGTGGTTAGGGACTCGAGTATGGCCACAGGAAACAGTAAATACCAGACTTATTGAAAGGGATCCTATAGGAAAGGGGAGACAAGGTTCATGTGGCTGCCCAGAAGAAGGTTCTGTTGAGTGTGTAAGATTCCACATTTCAGAGAAAAGGGCTAAAGTTAAGCTGGAATTGGGTGATGCATTTTACGACTGGGACTTTGATCGGGTTGGTGAAGAAGTTAGGCTAATGTGGACGAAAGAAGAAGAGAAAAAATTTGAGGATGTGGTTCGGTCAAACCCTCCATCACTTGAGAAATATTACTGGGACTATATTTTTAGGGCATTTCCTGATAAAAGCAGGGCAGAATTAGTTAGCTACTACTTCAATGTCTTTATGTTGCAGCGCAGAGGATACCAGAATAGGCACACTCCCGATGACATTGATAGTGATGACAATGATGAGGAAGCTGGACCATTAAGGAATGTTTTTGGACCTCTGATACAGAATTCTGGACATGAGATGCAGAGTTCGCGAGGCTCCATCTTATTAACCCCCAAAAAGACACATAAAAAGAGAAAATAG 2013 0.4545 MSMAGRLHLYDGVREENSGEIFGGSNDDSLCRFERLFAEFFSEICAFNCVLHYPPMLSDGQDVDLYRLFLVVRGKGGYDAVCKGKLWDSVGEESGMGVSVGSSVELVYXRYLSALDSWMKKVAESKVSPEFGVVDDRDKFGRRLMELQAEVEGLLSGCADERVVLVGEDVEGGLDEDDHNSDGRELSGANGVKSNGDEGGEHKQCDDSEMPDNDMDEAVLGNSDKGNDIMGGEEGFDGGKMPEEQAVDISDGANNNGTGVVSGGKKCDDSDDKGLVLDASGGNSDGDSSGHKRKREGSVLGSSSDDCDSPSRKRMRESAMDMLSWVTGVAKNPGDPEVGSIPEKSKWKSYTSQEGWKQVLLFREATFYRRGSEQSNEQRNWQNQKMHPCLYEEQVGTNYNLRDRLKCDKKLLFGKSASLRSSSDSSVATENRTPNSHAEGQSELLDSPDANAGLDKCATVRIPLGTNHQAEIPEWTGVTSESDSKWLGTRVWPQETVNTRLIERDPIGKGRQGSCGCPEEGSVECVRFHISEKRAKVKLELGDAFYDWDFDRVGEEVRLMWTKEEEKKFEDVVRSNPPSLEKYYWDYIFRAFPDKSRAELVSYYFNVFMLQRRGYQNRHTPDDIDSDDNDEEAGPLRNVFGPLIQNSGHEMQSSRGSILLTPKKTHKKRK* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0559 670 MobiDBLite consensus disorder prediction 423 452 - -
Vra9g0559 670 Pfam ARID/BRIGHT DNA binding domain 52 114 IPR001606 GO:0003677
Vra9g0559 670 SMART ELM2_2 462 512 IPR000949 -
Vra9g0559 670 MobiDBLite consensus disorder prediction 618 670 - -
Vra9g0559 670 MobiDBLite consensus disorder prediction 645 660 - -
Vra9g0559 670 MobiDBLite consensus disorder prediction 423 442 - -
Vra9g0559 670 SMART bright_3 35 121 IPR001606 GO:0003677
Vra9g0559 670 MobiDBLite consensus disorder prediction 287 319 - -
Vra9g0559 670 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1 53 669 - -
Vra9g0559 670 ProSiteProfiles ARID domain profile. 27 120 IPR001606 GO:0003677
Vra9g0559 670 CDD ARID 32 116 - -
Vra9g0559 670 Gene3D - 30 129 IPR036431 GO:0003677
Vra9g0559 670 SMART ARID_2 31 116 - -
Vra9g0559 670 MobiDBLite consensus disorder prediction 169 320 - -
Vra9g0559 670 CDD SANT 561 608 IPR001005 -
Vra9g0559 670 SUPERFAMILY ARID-like 38 123 IPR036431 GO:0003677
Vra9g0559 670 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 53 669 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0559 Vra-Chr9 6185695 6190250 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vra9g0559 ARID 3.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0559 - - pvu:PHAVU_010G100300g 954.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0791 4 14718017 14722793 Vra9g0559 9 6185695 6190250 PCT