Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0558 ATGTTCCTCTTTTTTCTTCTCTTCGTTCTCATTCTCCACACTTCCTCCTCCTCCGCCACCATCATTCTCCAAGGCAACGCCACTCTGCAAAGCCCCAACAACACTTTCCAACTTGGCTTCTTCAATTTCTTCCCAGGCCCGGGCCCGGGCCCGCCTAAATTCTACCTCGCCATCCGCCGCACCTCTTTGCCCAGCCCCAATACCATCTGGGTCGCCAACCGCCTCCACCCCTCCCCCTCCCAAGCCGCTTCATCCCTTGAACTCACCCCAACCGGTCAGTTACTCCTAACCCACTTCAACACCACTCTCTGGACCGCCGCCTCCGCCGCCACCGCCAACCTCACCCTCAAGCTTCTCGATTCCGGAAACCTCGTCCTCCTTACTTCCGACGGCGTCGTTTCATGGCAGAGCTTCGATTCCCCCTCGGACACGTGGCTCCCCGGCATGAACCTCACGCGCTTCAACTCCCTCACCTCTTGGCGCACGGAGACGGACCCTTCCCCGGGGCTTTACACCCTGCGGTTGAAACCATCCTTCTACGGCGAGTTCGAGCTCGTCTTCAACGAGACCGTTTCGTACTGGTCCACCGGGAACTGGAGCAATGGGACATTCCTCAACATCCCAGAGATGACCATCCCCTACCTCTACGCCTTTCACTTCGCCGCGCCGTTCTCCCCCGCCGCGGCCTTCGGTTTCTCCGAACGCGCCATCGAGACGAGCTTCCGACCGCCGACGATGTTCCGCCTGGAGCCCTTCGGGCAGGTCAAGCAGTACTCGTGGAACAGCCAATCGGGGTCCTGGCAGATGTTTTGGTTCAAGCCGGAGAGTGTGTGCCAGGTTCGGGGAATCTGCGGGGGGTTCGGGGTTTGCACTGGGGACACATCCAAATTCTGTGAGTGTGTGAGTGGGTTTGAGCCTTTGGATGGTCATGGGTGGGGTTCTGGTGATTACTCTCAAGGTTGTCACCGTGTGGACGCGGGGTGTGATGGGGGTGATGGGTTTGAAGATCTTGGTGCTGTGAGGTTTGGATTCGGTAATGTGAGTCTGGTTAAGGGGAAATCTAGAAGCTTTTGCGAGCGCGAGTGCTTGCGTGATTGTGGGTGCGTTGGGTTGAGTTTCGAAAAGCAGAGTGGGTTATGCAAGAAATTTTATGGTTCGCTTTCGGATTTTCAGAATTTAACCGCCGATGGTGAGAGTGAGGTTTTGCATGTTAGGGTTCCGAGCGGGGGATCTGGGAGGAAGGTGTTTGATTGGAAGGTTTTGAGTGGGGTTGTTATCGGGTCGGTTGCGGTTTTGGGGGTGGTGGTGGTGACATTGTTGGTGATGGTGAAGAGGAGGGTGGAGGGGAAGAAAATGGACGAGGATGAGGAAGATGGGTTTGTGGGTATGTTGAATTTGCGTGTGTTTTCTTACAAGGAACTTCAGTTGGCGACTCGGGGGTTTTCAGAGAAGATTGGGCACGGAGGGTTTGGGACGGTGTTTCAGGGGGAGTTGAGTGATGCTTCCGTTGTGGCTGTGAAGAGGTTGGAGAGGCCAGGGAGTGGGGAGAAGGAGTTCAGGGCGGAGGTCTCCACGATTGGGAATATTCAACACGTGAATCTCGTGCGGCTCAGAGGGTTTTGCTCTGAGAATTCTCACCGGCTTCTGGTTTATGAGTATATGCAGAACGGTGCTCTCAGTGTTTATTTGAGGAAGGAAGGACCTAGTCTGAGTTGGGATGTTAGGTTCAGGGTGGCCGTTGGCACTGCTAAGGGGATTGCTTATTTACACGAGGAATGTAGATGTTGCATCATACATTGTGATATAAAGCCAGAGAACATTCTTTTGGACGGTGATTTCACAGCCAAGGTTTCTGATTTTGGGTTAGCAAAGCTCATTGGGAGGGACTTCAGTAGGGTGTTGGCGACTATGAGGGGAACGTGGGGGTATGTTGCACCGGAGTGGATTTCTGGTGTGGCAATTACAACCAAGGCAGATGTTTACAGCTATGGAATGACAATGCTGGAGCTGATCGGCGGTAGGAGGAACGTGGAGGCACTGCCATCTGGCGGTGGAGAGAGTGGTACTGAAAGTGGAGGGAAGTGGTTCTTCCCACCATGGGCAGCGCAGCAGATAATAGAGGGAAATTTTGGTGAAGTGATTGATAAGAGACTTGGTAATGTGTATAACATTGAGGAGGCTAGAAGGGTTGCTTTGGTGGCAGTTTGGTGTATTCAAGATGATGAAGCAATGAGACCTACAATGGGTATGGTGGTGAAGATGTTGGAAGGGTTGGTGGAAGTAAGTGTTCCTCCTTCTCCAAAGTTGCTTCAAGCTCTGGTTACTGGGGATTCATTTCATGGGGTGAAGGCTAATTCAGGCAATGGTGTGTCTACTGGCGGAAGCTTATCAGATGGCAACTTGGAAGTTTCAACTGCTGATTCTGAATCATATACAGGGAATGTTTTTTCTCCATTAGATGTCAATGCCAATGTCAGTGTTCGATAA 2487 0.5267 MFLFFLLFVLILHTSSSSATIILQGNATLQSPNNTFQLGFFNFFPGPGPGPPKFYLAIRRTSLPSPNTIWVANRLHPSPSQAASSLELTPTGQLLLTHFNTTLWTAASAATANLTLKLLDSGNLVLLTSDGVVSWQSFDSPSDTWLPGMNLTRFNSLTSWRTETDPSPGLYTLRLKPSFYGEFELVFNETVSYWSTGNWSNGTFLNIPEMTIPYLYAFHFAAPFSPAAAFGFSERAIETSFRPPTMFRLEPFGQVKQYSWNSQSGSWQMFWFKPESVCQVRGICGGFGVCTGDTSKFCECVSGFEPLDGHGWGSGDYSQGCHRVDAGCDGGDGFEDLGAVRFGFGNVSLVKGKSRSFCERECLRDCGCVGLSFEKQSGLCKKFYGSLSDFQNLTADGESEVLHVRVPSGGSGRKVFDWKVLSGVVIGSVAVLGVVVVTLLVMVKRRVEGKKMDEDEEDGFVGMLNLRVFSYKELQLATRGFSEKIGHGGFGTVFQGELSDASVVAVKRLERPGSGEKEFRAEVSTIGNIQHVNLVRLRGFCSENSHRLLVYEYMQNGALSVYLRKEGPSLSWDVRFRVAVGTAKGIAYLHEECRCCIIHCDIKPENILLDGDFTAKVSDFGLAKLIGRDFSRVLATMRGTWGYVAPEWISGVAITTKADVYSYGMTMLELIGGRRNVEALPSGGGESGTESGGKWFFPPWAAQQIIEGNFGEVIDKRLGNVYNIEEARRVALVAVWCIQDDEAMRPTMGMVVKMLEGLVEVSVPPSPKLLQALVTGDSFHGVKANSGNGVSTGGSLSDGNLEVSTADSESYTGNVFSPLDVNANVSVR* 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0558 828 ProSitePatterns Serine/Threonine protein kinases active-site signature. 597 609 IPR008271 GO:0004672|GO:0006468
Vra9g0558 828 SMART serkin_6 479 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0558 828 SMART blect_4 20 141 IPR001480 -
Vra9g0558 828 Gene3D Transferase(Phosphotransferase) domain 1 554 763 - -
Vra9g0558 828 CDD STKc_IRAK 485 758 - -
Vra9g0558 828 Gene3D - 14 138 IPR036426 -
Vra9g0558 828 ProSiteProfiles PAN/Apple domain profile. 328 406 IPR003609 -
Vra9g0558 828 ProSiteProfiles Bulb-type lectin domain profile. 14 139 IPR001480 -
Vra9g0558 828 CDD PAN_AP_plant 324 407 - -
Vra9g0558 828 ProSiteProfiles Protein kinase domain profile. 479 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0558 828 SUPERFAMILY Protein kinase-like (PK-like) 462 756 IPR011009 -
Vra9g0558 828 Gene3D Phosphorylase Kinase; domain 1 443 553 - -
Vra9g0558 828 PIRSF SRK 1 810 IPR024171 GO:0004674
Vra9g0558 828 Pfam Protein kinase domain 482 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0558 828 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 13 814 - -
Vra9g0558 828 Pfam S-locus glycoprotein domain 194 306 IPR000858 GO:0048544
Vra9g0558 828 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-2 13 814 - -
Vra9g0558 828 Pfam D-mannose binding lectin 68 153 IPR001480 -
Vra9g0558 828 ProSitePatterns Protein kinases ATP-binding region signature. 485 507 IPR017441 GO:0005524
Vra9g0558 828 SUPERFAMILY alpha-D-mannose-specific plant lectins 54 199 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0558 Vra-Chr9 6153406 6156521 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0558 469 765 Receptor kinase-like Gene Family AT5G20050 47.419 7.64e-82 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vra9g0558 Pkinase 8.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0558 - - gmx:100778917 1311.98