Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0556 ATGACTTCTCCATATCCCCCTCGCCGGCGATCCGGCTCCGACTACAGCAGAACGCCGGGAAGGGTGCCCCCTTCTCCGGGCTACGCCTCGTCCGAGCTCAGCACCTCCACAATCTCCGAGCGCCAGAACCCCGTCGTCGCCGCCGCAAGGTCCTTCACCGGAATGTTCGCTGCGTGCTTCGCGCCCCCGGAATCCGACAACTCCAGGAGCCTCGGGGATTCCGAGGAGTTTAAGTCTTCTTCCACTGCATCGAATGGCTCAAGAGCTGGTTCAAGAGCTGGTAGTCAGAGAGGGCGTAACTCAAATGGAGGTATGAACATCAGTTCATACAACATAGTACAAAGGAAAGAACCTGGCATTGTGAAGTTCACCATGGAGGAAATCTTCCAAGTCACAAGAAATTTCTCCCCTTCTTTCAAGATTGGCCAAGGTGGTTTTGGTGCTGTGTACAAGGCAAAACTCTTGGATGGGACTGTTGTTGCAGTAAAGCGCGCGAAGAAGAGTCTATATGAGAAACATTTGGGAGTGGAGTTTCAGAGCGAGATCCAAACACTATCCAAGGTGGAACATTTGAACTTGGTCAAGTTGTATGGATATTTGGACCAAGGTGATGAAAGGATCATTGTTGTTGAGTATGTTCCAAATGGAACCCTCAGAGAACATTTAGATTGCATTCATGGGAGCGTTCTGGACCTTGCTGCACGTTTGGATGTAGCAATTGATGTTGCTCATGCTATCACCTATCTTCATATGTATATAGATCATCCTATCATTCATAGAGACATAAAATCTTCAAACATTCTTCTCACTGAAAATTTTCGAGCTAAAGTAGCAGACTTTGGTTTTGCTAGACAAGCAGCAGACAGTGACTCTGGCATGACACATGTTTCCACCCAAGTCAAAGGAACAGCTGGTTACTTGGATCCTGAATACCTGAAAACTTATCAACTAACTGAGAAAAGTGATGTGTATTCATTTGGAGTTTTGCTTGTTGAACTTGTCACAGGCAGACGCCCCATTGAACCAAAATTTGAACTCAAGGAGCGAATAACAGCAAAATGGGCCATGAAGAGGTTCATGGAGGACGATGCTATCTCAGTCTTGGACCCAAGACTGGATCAGACTGCTGCAAACACTTTGGCACTGCATAAGATTCTGGAGCTAGCTTTACAGTGCTTGGCTCCACGTAGACAAAACAGGCCTAGCATGAAAAGATGTGCCGAAATCCTTTGGTCCATCCGCAAGGATTTCAGAGAGCAGTTATCAGCTTCAAACTTCCGCTCATTTTCCACTTCTTCCCAAAGGAGCAGCTCACTGAGAGAGTGA 1326 0.4706 MTSPYPPRRRSGSDYSRTPGRVPPSPGYASSELSTSTISERQNPVVAAARSFTGMFAACFAPPESDNSRSLGDSEEFKSSSTASNGSRAGSRAGSQRGRNSNGGMNISSYNIVQRKEPGIVKFTMEEIFQVTRNFSPSFKIGQGGFGAVYKAKLLDGTVVAVKRAKKSLYEKHLGVEFQSEIQTLSKVEHLNLVKLYGYLDQGDERIIVVEYVPNGTLREHLDCIHGSVLDLAARLDVAIDVAHAITYLHMYIDHPIIHRDIKSSNILLTENFRAKVADFGFARQAADSDSGMTHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKFELKERITAKWAMKRFMEDDAISVLDPRLDQTAANTLALHKILELALQCLAPRRQNRPSMKRCAEILWSIRKDFREQLSASNFRSFSTSSQRSSSLRE* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0556 441 PANTHER CALMODULIN-BINDING RECEPTOR-LIKE CYTOPLASMIC KINASE 2 8 430 - -
Vra9g0556 441 SMART serkin_6 135 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0556 441 Gene3D Transferase(Phosphotransferase) domain 1 213 434 - -
Vra9g0556 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Vra9g0556 441 MobiDBLite consensus disorder prediction 1 40 - -
Vra9g0556 441 CDD STKc_IRAK 141 410 - -
Vra9g0556 441 MobiDBLite consensus disorder prediction 64 109 - -
Vra9g0556 441 ProSiteProfiles Protein kinase domain profile. 135 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0556 441 SUPERFAMILY Protein kinase-like (PK-like) 110 413 IPR011009 -
Vra9g0556 441 Pfam Protein kinase domain 140 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0556 441 MobiDBLite consensus disorder prediction 74 109 - -
Vra9g0556 441 Gene3D Phosphorylase Kinase; domain 1 97 212 - -
Vra9g0556 441 PANTHER RECEPTOR-LIKE PROTEIN 55 8 430 - -
Vra9g0556 441 ProSitePatterns Protein kinases ATP-binding region signature. 141 167 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0556 Vra-Chr9 6111182 6114694 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0556 123 403 Receptor kinase-like Gene Family AT1G79620 46.667 1.17e-71 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Vra9g0556 Pkinase 4.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0556 - - gmx:100792034 702.59