Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0551 ATGGGTTTTCCGGTCGGTTACGCCGAGGTCTTCTTCCCCAACCCCTTCCTCCACACACTGGCCTTCCTCGGCCTCCTACGAAACCTCGTCTTCTTTCTCTTCCACCTCCTCGGACTCTCCGACTTCCTCGAAACCGAGGTCGCATGGCCGGACCCCCGCATCCCCGCCACCACCGCCGCCGTCTCCAGACCTCCCTCCGTGTCGGCGCTACTCATCAGGGACATCCTCCCCGTCGCCAAGTTCGGAGAGTCTGAGGAAAACTCCTGCGCCTGCGCCGTCTGTCTGTTCGAGTTCTCCGAGGAGGAGGAGATTCGGCGCATGCGGAACTGCAAACACATTTTCCACCGCGCCTGCGTGGACCGTTGGATCGATCACGATCAAAAAACATGCCCTCTCTGTAGGACCCCCTTTGTGCCTGATGACATGCTTGATGATTATAATCAACGTCTCTGGGCTGCTTCTGGAATCAACGAGTTCTACTCCGATTACACTTCTTCTTTCTGA 504 0.5734 MGFPVGYAEVFFPNPFLHTLAFLGLLRNLVFFLFHLLGLSDFLETEVAWPDPRIPATTAAVSRPPSVSALLIRDILPVAKFGESEENSCACAVCLFEFSEEEEIRRMRNCKHIFHRACVDRWIDHDQKTCPLCRTPFVPDDMLDDYNQRLWAASGINEFYSDYTSSF* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0551 167 SUPERFAMILY RING/U-box 71 141 - -
Vra9g0551 167 SMART ring_2 91 133 IPR001841 -
Vra9g0551 167 ProSiteProfiles Zinc finger RING-type profile. 91 134 IPR001841 -
Vra9g0551 167 PANTHER BRH1 RING FINGER PROTEIN 1 163 - -
Vra9g0551 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 139 IPR013083 -
Vra9g0551 167 Pfam Ring finger domain 90 134 IPR001841 -
Vra9g0551 167 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0551 Vra-Chr9 6019238 6019949 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0551 1 166 C3H Transcription Factor Family AT1G63840 46.512 6.89e-51 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0551 K16281 - gmx:100790975 311.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0795 4 14796747 14797404 Vra9g0551 9 6019238 6019949 PCT