Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0550 ATGGGATTTACTGTGTGTTGTGCAGAGTTATACTTTCCCACACCCTTCATTTCCCTGTCGGAAATTCTAGGCCTCCTCCGAAACCTTGTATTCTTCTACTTCTTCAATATCTTCGGCTTCTCCCACTTTCTCCGAATCCAGCACTCGGCAGTTACGTCCGTAACCACTTCCACAGTCACCTCCGCCACCACCTCTGACGCTGCACTCGCCAGAACTCATGAAGTATCGCCGCCAATCATCAGGGAGCTCCTTCCGGTGGTCCTGTTTGGAGAGACAGGAGAAAACGCGTGCATGTGCGTGTTCTGTCTGTCTGAGTTCTCCAAGGAGGAGGAGATCCGGTGCATGCAGAACTGTAAGCACATTTTTCATCGCACCTGTGTGGACCGTTGGATCAATAGCAGTCACAAAACGTGTCCTCTTTGTAGGGTTCCCTTTGTACTCAATCCTGTTAGTGAAAGCCTGAGTTTCTAA 471 0.4968 MGFTVCCAELYFPTPFISLSEILGLLRNLVFFYFFNIFGFSHFLRIQHSAVTSVTTSTVTSATTSDAALARTHEVSPPIIRELLPVVLFGETGENACMCVFCLSEFSKEEEIRCMQNCKHIFHRTCVDRWINSSHKTCPLCRVPFVLNPVSESLSF* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0550 156 SMART ring_2 99 141 IPR001841 -
Vra9g0550 156 PANTHER BRH1 RING FINGER PROTEIN 1 150 - -
Vra9g0550 156 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 147 IPR013083 -
Vra9g0550 156 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 150 - -
Vra9g0550 156 Pfam Ring finger domain 98 142 IPR001841 -
Vra9g0550 156 SUPERFAMILY RING/U-box 79 148 - -
Vra9g0550 156 ProSiteProfiles Zinc finger RING-type profile. 99 142 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0550 Vra-Chr9 6010384 6010948 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0550 1 146 C3H Transcription Factor Family AT1G63840 37.584 1.24e-24 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0550 K16281 - vun:114167546 239.195