Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0546 ATGAGAGTTGAAGTAGAAATAATTTCTAGAGAAGATATTAGACCTTCTTCTCCCACACCTTCTCACCTTAGAGTCTTCAGCCTTTCCCTTTTGGATCACCTTATCCCATCGCCATATGCTCCAATAATCCTGTTCTACAATTCACCTAAGAGTAACACAACTTACCTTTCTGAAGTCCCCAAGAGGTTACAATTGCTGAAAGAATCTCTATCAGAGACACTAACCAAATTCTACCCTCTAGGTGGCAAAATCAAAGAGGATCTGTCCATTGAGTGCAATGATGAAGGTGCTAATTTTGTGCTGGCCCGTGTGAAATGTCCTCTAGATGAATTTCTAGTCCAACCTCAGGTAACCGTACTACACAAGTTTCTTCCTGTTGATCTTGTGTCTGAAGGATCAAATTCAGGAACCTATGTGACTAACATTCAAGTGAACATCTTTGAATGTGGGGGAATTGCCATTGGCATGTGCATTTCTCATAGGATCCTAGATGGAGCTGCACTAAGCACCTTTATCAAAGGGTGGACAGAAAGGGCCAAGGGCTGTAACCAATCAACCCAACCAAACTTCATAGCACCTTCTCTCTTCCCCACTAGCAGTCCATGGTTTAGAGACTTATCTATGTGGATGTGGGGTTCCTTGTTCAAACAAGGCAAGTGGATCACAAGGAGGTTTCTGTTTAGAAATTCAGCTATTGCCACAGTCAAGGCTCAAACACCAGGCACAGAAAATTCCACACGTCTGCAGATGGTTTCTGCTATGCTGTGGAAGTCCCTCATGGGGGTGTCCAAGGCACGGTTTGGCACCCAAAGGCCTTCTTTTGTTACTCATCTGGTGAACCTGAGGAGAAAAATGGACGAGGCTCTTTGTCCTGAACATGCTATGGGAAATCTTCTTTGGTTGGCTGCAGAGAGTGTGGATGATAATGAGATGGGGTTGGAGGAGTTGGTGGGGAAGTTGAGGACTGCAATATCAAGAGTAGATAACGAATTTCTTGAAGAATTGAAAGGTGATAAGGGAAGGTCAACTATGCAAGAGAGTCTTAGGGCAATAGGTGAGATGGGATCAAAGAGTGAAGTGGATTATTTTGGGTTTAGTAGTTGGTGCAATTTTGGGTACTACGAGGCTGATTTTGGGTGGGGAAAACCCACATGGGTGAGTGGTGCTGGTTCAATTGACTCAGTTTCAATGTTTATGAATCTTATCATCCTAGTGGACACAAGGTTGGGAGATGGCATAGAAGCTTGGGTTACCTTGGAAGAGGAAGATATGACTCAATTGAAAGCAAACCCTGAACTCCTCACTTGTGCAACACTCGATCCAAGTCCTTTAGCAATGAGTTCAGTTGCCTGA 1353 0.439 MRVEVEIISREDIRPSSPTPSHLRVFSLSLLDHLIPSPYAPIILFYNSPKSNTTYLSEVPKRLQLLKESLSETLTKFYPLGGKIKEDLSIECNDEGANFVLARVKCPLDEFLVQPQVTVLHKFLPVDLVSEGSNSGTYVTNIQVNIFECGGIAIGMCISHRILDGAALSTFIKGWTERAKGCNQSTQPNFIAPSLFPTSSPWFRDLSMWMWGSLFKQGKWITRRFLFRNSAIATVKAQTPGTENSTRLQMVSAMLWKSLMGVSKARFGTQRPSFVTHLVNLRRKMDEALCPEHAMGNLLWLAAESVDDNEMGLEELVGKLRTAISRVDNEFLEELKGDKGRSTMQESLRAIGEMGSKSEVDYFGFSSWCNFGYYEADFGWGKPTWVSGAGSIDSVSMFMNLIILVDTRLGDGIEAWVTLEEEDMTQLKANPELLTCATLDPSPLAMSSVA* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0546 450 Gene3D - 218 435 IPR023213 -
Vra9g0546 450 Pfam Transferase family 4 433 - -
Vra9g0546 450 Gene3D - 1 202 IPR023213 -
Vra9g0546 450 PANTHER VINORINE SYNTHASE-LIKE 5 446 - -
Vra9g0546 450 PANTHER F21J9.9 5 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0546 Vra-Chr9 5932194 5934677 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0546 3 424 Monolignol Biosynthesis Gene Families AT5G48930 24.775 1.82e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0546 - - gmx:100305374 739.184