Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0544 ATGAGACAAGCTGGTGCATATTCAGGGTTACTGTGTGGAGGGGTATCAGGAAGGACAGGACCCCACTCTCTGCCCTTGGCAAGGATCAAGAAGATCATGAAGAAGTCAGGGGATGATGTTAAAATGATATCAGGGGAGGCTCCAATTATCTTCTCCAAGGCTTGTGAGCTCTTCATTGAGGAACTTACTAGAAGGTCCTGGATCATGGCCATCCAAGGCAAAAGGAGGACTCTGCACAAAGAGGACTTGACCTCTGCAGTTATAGCCACTGATCTATTTGACTTTTTGATCACTTTGGTTTCCAATTCTGACAGCCATTCACTTGGTAGCACCACCACTACCATGGAGGTAGAAACTATATATTAG 366 0.4563 MRQAGAYSGLLCGGVSGRTGPHSLPLARIKKIMKKSGDDVKMISGEAPIIFSKACELFIEELTRRSWIMAIQGKRRTLHKEDLTSAVIATDLFDFLITLVSNSDSHSLGSTTTTMEVETIY* 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0544 121 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 109 - -
Vra9g0544 121 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Vra9g0544 121 Gene3D Histone, subunit A 15 102 IPR009072 GO:0046982
Vra9g0544 121 PANTHER HAP5 SUBUNIT OF HAP COMPLEX 1 109 - -
Vra9g0544 121 SUPERFAMILY Histone-fold 17 96 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0544 Vra-Chr9 5910658 5911034 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0544 22 104 CCAAT-HAP5 Transcription Factor Family AT1G54830 60.241 1.15e-31 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vra9g0544 CBFD_NFYB_HMF 1.9e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0544 - - gmx:100777614 217.624