Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0542 ATGGCAGCTGTTAGGGCTTCCTCTGTAAGACGTATAGGAATCACAATCAATGTTTCTTTCAGTACGGAATTAGTTCAGCACCGTCACTATCACCATAGTGTGTGTGTGAACCTTGCAAGGTTGCCGAGTGATCTACCTAGTCATCCTTATTACAAAAGAGAGTTACAGTCTGCTAAGAATCAATTCTCTAGCTATTGTTTCCGGAGTGCCCTTCCTTTTGCTTCTGCGAGCCACGTGTTGAATCGCCGATTTTATTCGTCGACGGTGGGTGGTGATAAAGGAAGTAGAGATGCTGGTACAGAAGTCTCTGCTGGTTCTGGTGCGAGTGACATGAATACCACTGGTGATTCTGTTGCTGGGGGTGATTGGGCTGAGAGGATTAGAGATGTTTGGAAGCGTGTGGGAGAGTCAGCATCATATGCTGGGGAAAAGGTTAAAGCAACATCCGATGATCTCACTCCATATGCTCAGCAGTTGCTTGATTCACACCCATATTTGGGCAAGGTGGTTATTCCGGTTGGTGGTACTTTGACTGCTACGCTAATAGCTTGGTTCTTGATGCCTGTGATTTTGAGGAAATTTCACAGATATGCAATGCAAGGTCCCGTTTCTCTATTGCCAGGAAGCATGTCTGGAGATCCAGTTCCTTACGAGAAAAGCTTCTGGGGTGCTATGGAGGATCCTGTGCGATATTTAGTTACCTTCATCGCATTCTCACAAATTGGTGTAATGGTAGCTCCAACAACTATAACAGCAGAATATCTTGCACCAGTTTGGAGGGGTGCAGTCATAGTTTCATTTGTATGGTTTTTGCATAGATGGAAAACAAATGTTTTTGCACGGACATTGTCCAGTCAAAGTTTACTTGGACTTGATAGGGACAAAGTGCTCGCTCTTGACAAAATTTCATCAATTGGTCTATTTGTGATTGGTATAATGGCTTTTGCTGAGGCTTGTGGTGTGGCCGTGCAATCTATTGTTACTGTTGGTGGTATAGGAGGAGTGGCTACTGCTTTTGCTGCCAAGGACATTCTTGGCAACGTGTTTAGCGGTTTATCTATGCAGTTTTCTAAGCCTTTTTCAGTTGGAGATACAATAAAAGCAGGCTCGATAGAGGGTCAAGTGGTGGAAATGGGTCTTACTACTACATCTTTGCTGAGTTCAGAGAAGTTTCCTGTCATTGTTCCAAACTCATTTTTTTCTAGCCAGGTTATTGTGAATAAGTCCCGTGCTGAATATCGTGCCATTATTAGCAAAATTCCTCTGCACACTGAGGATATAAGTAAGATTCCCCAGATATCAGATGATGTAAAAAGCATGCTCAGGTCAAATGCAAAGGTTTTCTTAGGGAAAGATGTTCCCTACTGTTTCTTATCCCGTATAGAAAGTTCATATGCAGAATTGACTCTTGGATACAACCTCAAACATATGCGCAGAGATGAACTATACTCTGCAGAACAAGAAATTCTGCTTCTGGCAGTTCAGATCATTAAAAATCATGGGGTTGCTCTCGGGAGCACATGGCAAGAAATGCCTTCTAAATGA 1545 0.4298 MAAVRASSVRRIGITINVSFSTELVQHRHYHHSVCVNLARLPSDLPSHPYYKRELQSAKNQFSSYCFRSALPFASASHVLNRRFYSSTVGGDKGSRDAGTEVSAGSGASDMNTTGDSVAGGDWAERIRDVWKRVGESASYAGEKVKATSDDLTPYAQQLLDSHPYLGKVVIPVGGTLTATLIAWFLMPVILRKFHRYAMQGPVSLLPGSMSGDPVPYEKSFWGAMEDPVRYLVTFIAFSQIGVMVAPTTITAEYLAPVWRGAVIVSFVWFLHRWKTNVFARTLSSQSLLGLDRDKVLALDKISSIGLFVIGIMAFAEACGVAVQSIVTVGGIGGVATAFAAKDILGNVFSGLSMQFSKPFSVGDTIKAGSIEGQVVEMGLTTTSLLSSEKFPVIVPNSFFSSQVIVNKSRAEYRAIISKIPLHTEDISKIPQISDDVKSMLRSNAKVFLGKDVPYCFLSRIESSYAELTLGYNLKHMRRDELYSAEQEILLLAVQIIKNHGVALGSTWQEMPSK* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0542 514 Pfam Mechanosensitive ion channel 301 503 IPR006685 GO:0016020|GO:0055085
Vra9g0542 514 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL-RELATED 80 510 - -
Vra9g0542 514 Gene3D - 254 358 - -
Vra9g0542 514 Gene3D - 359 407 IPR023408 -
Vra9g0542 514 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 80 510 - -
Vra9g0542 514 MobiDBLite consensus disorder prediction 89 120 - -
Vra9g0542 514 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 256 342 IPR011014 GO:0016020
Vra9g0542 514 SUPERFAMILY Sm-like ribonucleoproteins 343 408 IPR010920 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0542 1 510 Mechanosensitive Ion Channel Family AT4G00290 55.556 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0542 K22047 - gmx:100789047 866.3