Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0536 ATGTCTGGTGTTGAGTCTGACCACAACAACATCAAAGGGGTACCAACTCATGGTGGACGCTACATTCAGTACAATATCTATGGCAACCTCTTCGAAGTTTCCAGAAAGTATGTCCCTCCTATTCGCCCTGTGGGTAGAGGTGCTTATGGTATTGTTTGTGCTGCTGTAAATGCGGAGACAGGAGAGGAAGTTGCCATTAAGAAGGTTGGCAATGCATTTGACAACAGAATAGATGCCAAGAGGACCTTACGAGAAATTAAACTTCTTCGGCACATGGATCATGCAAACATTATGTCCATTAGAGATATTATACGACCTCCTCAGAAGGAAAACTTCAATGATGTATACCTTGTTTCCGAGTTAATGGACACAGATCTCCATCAAATAATACGTTCCAATCAACCACTGACTGATGATCATTGTCGGTATTTTCTGTATCAATTGCTTCGAGGACTCAAATATGTACATTCAGCAAATGTTTTGCACCGTGATCTAAAGCCTAGCAATTTGCTATTGAATGCCAATTGTGACCTTAAGATTGCCGATTTCGGCCTTGCTAGAACTACATCTGAAACTGATTTTATGACCGAGTATGTGGTCACTCGATGGTACCGAGCTCCCGAGTTACTTCTTAATTGTTCAGAATATACCGCAGCCATTGATATATGGTCTGTTGGTTGCATACTTGGAGAAATCATAACAAGACAGCCTCTCTTTCCTGGCAAAGATTATGTTCATCAGCTGAGACTAGTCACAGAGCTGATTGGTTCACCCGATGATGCGAGCCTTGGATTTCTACGAAGTGATAATGCTCGTAGATATGTAAAACAGCTTCCCCAGTATCCAAAGCAAAACTTTTCTGCTAGATTTCCCAGCATGTCTCCTGGTGCTGTTGATTTGCTAGAGAAGATGCTTATCTTTGATCCTAACAGGCGTATTACAGTTGATGAGGCATTGAGCCACCCATACATGGCACCTCTCCACGACATCAATGAGGAACCTGTTTGCACTAGACCCTTCAGTTTTGACTTTGAGCAACCGTCATTCACTGAAGAAGATATCAAGGAACTCATCTGGAGAGAATCTGTGAAGTTCAATCCTCTTCCACCAGTCTACTGA 1119 0.4245 MSGVESDHNNIKGVPTHGGRYIQYNIYGNLFEVSRKYVPPIRPVGRGAYGIVCAAVNAETGEEVAIKKVGNAFDNRIDAKRTLREIKLLRHMDHANIMSIRDIIRPPQKENFNDVYLVSELMDTDLHQIIRSNQPLTDDHCRYFLYQLLRGLKYVHSANVLHRDLKPSNLLLNANCDLKIADFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCILGEIITRQPLFPGKDYVHQLRLVTELIGSPDDASLGFLRSDNARRYVKQLPQYPKQNFSARFPSMSPGAVDLLEKMLIFDPNRRITVDEALSHPYMAPLHDINEEPVCTRPFSFDFEQPSFTEEDIKELIWRESVKFNPLPPVY* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0536 372 Gene3D Phosphorylase Kinase; domain 1 21 361 - -
Vra9g0536 372 ProSitePatterns MAP kinase signature. 73 176 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vra9g0536 372 CDD STKc_TEY_MAPK 31 367 - -
Vra9g0536 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Vra9g0536 372 ProSiteProfiles Protein kinase domain profile. 38 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0536 372 ProSitePatterns Protein kinases ATP-binding region signature. 44 68 IPR017441 GO:0005524
Vra9g0536 372 Pfam Protein kinase domain 42 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0536 372 Gene3D Transferase(Phosphotransferase) domain 1 122 351 - -
Vra9g0536 372 SMART serkin_6 38 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0536 372 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 14 371 - -
Vra9g0536 372 SUPERFAMILY Protein kinase-like (PK-like) 41 331 IPR011009 -
Vra9g0536 372 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 14 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0536 Vra-Chr9 5835167 5841137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0536 3 367 MAP Kinase Gene Family AT4G01370 85.479 0.0 682
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vra9g0536 Pkinase 3.9e-70 CL0016