Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0531 ATGTCAGTGTATGACGCAGCTTTCGTCGACACACAGCTTTCCAAACGCACTTCCATCTTCGGCCTCCGTCTCTGGGTCGTCATCGGAATCCTTGTCGGATCCCTCATCGTCATCGTCCTCTTTTTCATCTCTCTCTGCCTCACATCCCGCCGCCGCCACCACCACAAAACTCCCCTCCGCCGCCGCGCCGCCGCCATCCCCACTCCGCCCATTTCCAAGGAAATCCTGGAGATCGTTCACGTTGCCCCGCCGCCAGACACCGTCAACCTCCCGCCTCCGAAGGCGGAGCCACGCGCCGCCGCCGTACTGTACTCCAGTGGGGAGAGCAGGGGAGCGGTGAGCCTGTGCGAAACGGCGTCGTCACTGGGGAGCGGGAGTGTGGGCCCCGAAGTGTCGCATCTCGGGTGGGGGAGGTGGTTCACGCTGAGGGAACTGGAAGCTGCGACTAATGGATTGTGTGAAGAGAACGTGATTGGTGAAGGTGGCTATGGAATTGTTTATCGTGGGTTGTTACCTGATGGAAACAAGGTTGCTGTCAAGAACCTTTTGAATAATAAAGGCCAAGCTGAAAGAGAATTTAAAGTAGAGGTAGAAGCAATTGGTCGTGTGCGCCATAAGAATCTTGTTAGGTTGCTTGGATACTGTGTTGAGGGTGCTTACAGGATGCTTGTATATGAATATGTTGACAATGGGAATCTAGAACAGTGGCTGCACGGCGATGTTGGAGCTGTGAGCCCTATAACCTGGGATATCCGAATGAACATTATATTGGGCACAGCAAAAGGACTGGCCTATCTTCATGAGGGTCTTGAACCGAAAGTTGTCCACAGAGACGTCAAATCGAGCAACATACTGCTTGATCGTCAATGGAACCCAAAGGTTTCTGATTTTGGGCTTGCCAAGCTTTTGTCTGCTGATCATAGTTATGTCACTACTCGAGTCATGGGAACCTTTGGTTATGTTGCACCTGAGTATGCCTGCACTGGAATGCTGACTGAGAAGAGTGATGTGTATAGTTTTGGAATACTTATCATGGAAATAATTACAGGAAGAAGTCCTGTTGATTACAGTAGACCACAAGGAGAGGTTAATTTGATAGAGTGGTTGAAAAGCATGGTTGCGAATCGAAAATCTGAGGAAGTAGTTGATCCTAAGATTGCTGAAAAGCCATCTTCAAGGGCTATTAAACGGGCTCTTTTGGTTGCTCTTCGATGTGTCGACCCTGATGCTGCAAAGAGGCCTAAAATAGGCCATGTTATCCACATGCTTGAGGCTGAGGACCTCTTATTCCGTGATGAACGAAGGACTGAGGGAGAATCTTCCCGTTCCCACCGTGATTATCAACTGGAGCATAAAGGCTCAGGATTAGACAAAAGACAAACAGGTGGAGAAATCAACTCTCAGAGTGAAGATGACAGTTCTACCAGTAGTAGATATCACCATCATCAGCCCACTAGATGGAGATAA 1467 0.4942 MSVYDAAFVDTQLSKRTSIFGLRLWVVIGILVGSLIVIVLFFISLCLTSRRRHHHKTPLRRRAAAIPTPPISKEILEIVHVAPPPDTVNLPPPKAEPRAAAVLYSSGESRGAVSLCETASSLGSGSVGPEVSHLGWGRWFTLRELEAATNGLCEENVIGEGGYGIVYRGLLPDGNKVAVKNLLNNKGQAEREFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVDNGNLEQWLHGDVGAVSPITWDIRMNIILGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRQWNPKVSDFGLAKLLSADHSYVTTRVMGTFGYVAPEYACTGMLTEKSDVYSFGILIMEIITGRSPVDYSRPQGEVNLIEWLKSMVANRKSEEVVDPKIAEKPSSRAIKRALLVALRCVDPDAAKRPKIGHVIHMLEAEDLLFRDERRTEGESSRSHRDYQLEHKGSGLDKRQTGGEINSQSEDDSSTSSRYHHHQPTRWR* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0531 488 PANTHER BNACNNG08720D PROTEIN 1 448 - -
Vra9g0531 488 ProSitePatterns Protein kinases ATP-binding region signature. 158 180 IPR017441 GO:0005524
Vra9g0531 488 ProSitePatterns Serine/Threonine protein kinases active-site signature. 274 286 IPR008271 GO:0004672|GO:0006468
Vra9g0531 488 SUPERFAMILY Protein kinase-like (PK-like) 130 424 IPR011009 -
Vra9g0531 488 MobiDBLite consensus disorder prediction 434 458 - -
Vra9g0531 488 SMART serkin_6 152 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0531 488 Gene3D Transferase(Phosphotransferase) domain 1 228 439 - -
Vra9g0531 488 CDD STKc_IRAK 158 424 - -
Vra9g0531 488 MobiDBLite consensus disorder prediction 434 488 - -
Vra9g0531 488 Pfam Protein kinase domain 155 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0531 488 ProSiteProfiles Protein kinase domain profile. 152 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0531 488 PANTHER OS01G0323000 PROTEIN 1 448 - -
Vra9g0531 488 Gene3D Phosphorylase Kinase; domain 1 132 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0531 Vra-Chr9 5802503 5806134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0531 121 424 Receptor kinase-like Gene Family AT4G02010 45.779 6.92e-93 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vra9g0531 Pkinase 3.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0531 - - gmx:100777348 831.247
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0804 4 14891956 14895791 Vra9g0531 9 5802503 5806134 PCT