Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0530 ATGGTGTCGGTGAACCCAAACCCCGCCCAAGGCTTTTACTTCTTCGATCCCTCCAATATGACCCTTCCCGGCGTGAATTCTCTTCCGCCGCCACCGCCGCCAACTCAGACTCCAGCCGTTTCCCCCGCCGTGGAGGATCCAAATAAGAAGATCCGGAAACCCTACACGATTACGAAGTCCAGGGAGAGCTGGACCGAGCAGGAGCACGACAAATTTCTAGAAGCTCTCCAATTATTTGATCGGGACTGGAAAAAGATTGAAGCATTTGTTGGTTCAAAAACTGTTATCCAGATAAGAAGTCATGCACAGAAGTATTTTCTTAAAGTTCAGAAGAATGGAACAAGTGAACATGTTCCTCCTCCCCGGCCAAAGAGAAAAGCTACTCACCCATACCCTCAAAAGGCTCCTAAAATCACTCCTACTGCATCCCAAGTTATGGGCCCACTGCAACCTTCATCTGCTTTCATTGAACCTGCATATATTTATAGCTCGGATTCTTCATCTGTTCTTGGAACTCCAGTTACCAACATGCCTTTGACGACTTGGAACTATAATGCTAAACCACCCGTCAATGTGCCACAAGTGACTAGAGATGACATGGGCTTGACCGGAGTGGCACAAACTGTTCCTCTTAACTGTTGCTATAGCAGTAGCAATGAGAACACCCCTCCAACTTGGCCAAGTAGCAAAAAGATGAATCAAGGTGGCCAGGGCAAGCCAATGAAAGTAATGCCAGATTTTGCTCAAGTCTACAGCTTCATTGGCAGTGTTTTTGATCCAAATTCGACTAATCAACTTCAGAAACTAAGACTGATGGACCCAATAAATGTGGAAACGGTATTACTGTTGATGAGAAATCTATCAGTCAATTTAATGAGTCCAGAGTTTGAGGACCATAAAAGGCTGCTTTCATCATATGATACCGACTCTGATGAGTCGAAGCATGTTAATATTTGCAGCAAATCCCTCAATAATAAATCCGAGAGTGCTATTATGTCTGCATAA 1005 0.4458 MVSVNPNPAQGFYFFDPSNMTLPGVNSLPPPPPPTQTPAVSPAVEDPNKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRPKRKATHPYPQKAPKITPTASQVMGPLQPSSAFIEPAYIYSSDSSSVLGTPVTNMPLTTWNYNAKPPVNVPQVTRDDMGLTGVAQTVPLNCCYSSSNENTPPTWPSSKKMNQGGQGKPMKVMPDFAQVYSFIGSVFDPNSTNQLQKLRLMDPINVETVLLLMRNLSVNLMSPEFEDHKRLLSSYDTDSDESKHVNICSKSLNNKSESAIMSA* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0530 334 PANTHER MYB TRANSCRIPTION FACTOR 2 329 - -
Vra9g0530 334 MobiDBLite consensus disorder prediction 24 40 - -
Vra9g0530 334 SMART sant 60 108 IPR001005 -
Vra9g0530 334 MobiDBLite consensus disorder prediction 23 53 - -
Vra9g0530 334 Gene3D - 64 111 - -
Vra9g0530 334 MobiDBLite consensus disorder prediction 218 239 - -
Vra9g0530 334 MobiDBLite consensus disorder prediction 112 146 - -
Vra9g0530 334 ProSiteProfiles SANT domain profile. 59 112 IPR017884 -
Vra9g0530 334 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Vra9g0530 334 PANTHER SWI/SNF COMPLEX-RELATED 2 329 - -
Vra9g0530 334 CDD SANT 63 106 IPR001005 -
Vra9g0530 334 Pfam Myb-like DNA-binding domain 61 106 IPR001005 -
Vra9g0530 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Vra9g0530 334 SUPERFAMILY Homeodomain-like 55 111 IPR009057 -
Vra9g0530 334 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 59 108 IPR006447 GO:0003677
Vra9g0530 334 MobiDBLite consensus disorder prediction 218 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0530 Vra-Chr9 5794186 5800321 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vra9g0530 Myb_DNA-binding 2.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0530 - - gmx:778090 584.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0530 9 5794186 5800321 Vra9g0530 9 5794186 5800321 ECH
Vra9g0530 9 5794186 5800321 Vra4g0811 4 14984749 14991132 ECH
Vra4g0811 4 14984749 14991132 Vra9g0530 9 5794186 5800321 PCT